Showing : vsn • reset
0
votes
1
reply
1.2k
views
Single channel spike in controls with custom microRNA slides - Normalization help needed
Normalization vsn Normalization vsn
16.8 years ago David ▴ 860
0
votes
0
replies
1.1k
views
Nomalization using spike-in controls in single channel arrays using limma
Normalization vsn Normalization vsn
16.8 years ago David ▴ 860
0
votes
1
reply
1.2k
views
problem with createBeadSummaryData
Normalization vsn Normalization vsn
updated 16.8 years ago by ★ 1.1k • written 16.8 years ago by ▴ 630
0
votes
0
replies
1.4k
views
SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
17.0 years ago elliot harrison ▴ 230
0
votes
0
replies
1.0k
views
Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
17.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
981
views
(no subject)
Microarray Normalization GO probe vsn limma Microarray Normalization GO probe vsn limma
17.0 years ago Gordon Smyth 53k
0
votes
2
replies
2.1k
views
Can't load annotations with lumi
Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn
updated 17.1 years ago by ★ 1.2k • written 17.1 years ago by ▴ 280
0
votes
1
reply
856
views
tilingArray question
vsn vsn
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 90
0
votes
1
reply
1.7k
views
Normalization of Agilent miRNA arrays using spike-ins
miRNA Normalization Preprocessing vsn limma miRNA Normalization Preprocessing vsn limma
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 60
0
votes
5
replies
1.9k
views
Detection of differential expression using limma
Microarray Normalization vsn limma Microarray Normalization vsn limma
updated 17.2 years ago by ▴ 10 • written 17.2 years ago by ▴ 60
0
votes
2
replies
3.2k
views
installing problem - preprocessCore, affy on linux platform
Biobase genefilter affy vsn gcrma matchprobes preprocessCore Biobase genefilter affy vsn
updated 17.3 years ago by ★ 6.5k • written 17.3 years ago by ▴ 20
0
votes
3
replies
1.7k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 17.5 years ago by ▴ 730 • written 17.5 years ago by ▴ 110
0
votes
1
reply
1.0k
views
Agilent single color array
Normalization Preprocessing vsn limma Normalization Preprocessing vsn limma
updated 17.5 years ago by ★ 6.5k • written 17.5 years ago by ▴ 400
0
votes
2
replies
1.7k
views
Agilent single color array
Normalization Preprocessing vsn limma Normalization Preprocessing vsn limma
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 6.5k
0
votes
1
reply
1.4k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization vsn plier Normalization vsn plier
updated 17.5 years ago by ★ 6.0k • written 17.5 years ago by ▴ 20
1
vote
0
replies
794
views
Normalization Recommendations- severe biological variation
Normalization vsn Normalization vsn
17.5 years ago Siobhan A. Braybrook ▴ 60
0
votes
1
reply
1.2k
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 17.6 years ago by ▴ 30 • written 17.6 years ago by 53k
0
votes
0
replies
1.9k
views
Removing control probes and treating technical replicates in Agilent one colour data
Microarray GO vsn limma Microarray GO vsn limma
17.7 years ago eldridb@stud.ntnu.no ▴ 10
0
votes
1
reply
994
views
row.names in the latest vsn
probe vsn probe vsn
updated 17.8 years ago by ▴ 110 • written 17.8 years ago by ★ 13k
0
votes
1
reply
1.3k
views
running vsn from Limma
vsn limma vsn limma
updated 17.8 years ago by ▴ 730 • written 17.8 years ago by ▴ 20
0
votes
1
reply
969
views
Update vsn: http://www.bioconductor.org/packages/devel/bioc/html/vsn.html
vsn vsn
17.8 years ago Roumyana Yordanova ▴ 110
0
votes
3
replies
1.5k
views
vsn with a reference set
vsn PROcess vsn PROcess
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 110
0
votes
1
reply
843
views
Working with the vsn object
vsn vsn
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 490
0
votes
0
replies
831
views
A couple VSN related questions
GO Kidney vsn GO Kidney vsn
17.9 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
933
views
A couple VSN related questions
Kidney vsn Kidney vsn
updated 17.9 years ago by ★ 13k • written 17.9 years ago by ▴ 20
0
votes
0
replies
1.1k
views
custom affylmGUI menus
Normalization vsn affylmGUI Normalization vsn affylmGUI
18.1 years ago Stefanie De Bodt ▴ 10
0
votes
1
reply
765
views
VSN: narrowing down probe sets for parameter estimation
Microarray probe vsn Microarray probe vsn
updated 18.2 years ago by ★ 13k • written 18.2 years ago by ▴ 50
0
votes
1
reply
1.4k
views
combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
18.2 years ago Richard Harrison ▴ 70
0
votes
2
replies
2.3k
views
Agilent 4x44 single color expression arrays
Normalization probe vsn limma gcrma Normalization probe vsn limma gcrma
18.2 years ago Ido M. Tamir ▴ 320
0
votes
0
replies
842
views
vsn and scaling
Normalization vsn Normalization vsn
18.3 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.2k
views
predict vsn with reference
Microarray affy vsn limma affyio Microarray affy vsn limma affyio
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 10
0
votes
2
replies
1.5k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 70
0
votes
1
reply
1.3k
views
batch effects and VSN
Normalization Regression vsn limma oligo Normalization Regression vsn limma oligo
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 330
0
votes
2
replies
1.1k
views
Problem with "as.matrix.vsn" and "duplicateCorrelation" fromlimma
vsn vsn
updated 18.3 years ago by ★ 13k • written 18.3 years ago by 53k
0
votes
0
replies
1.9k
views
Limma: Very high logFC values
Preprocessing probe vsn limma Preprocessing probe vsn limma
18.3 years ago Gordon Smyth 53k
0
votes
1
reply
1.6k
views
globaltest - multinomial model
Survival affy vsn limma globaltest affyio Survival affy vsn limma globaltest affyio
updated 18.4 years ago by ▴ 150 • written 18.4 years ago by ▴ 330
0
votes
8
replies
4.1k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ▴ 100
0
votes
1
reply
1.2k
views
Needed help on maanova fitmaanova function
affy vsn limma maanova affyio affy vsn limma maanova affyio
18.4 years ago Marcelo Laia ▴ 450
0
votes
0
replies
1.5k
views
Using Ringo
Normalization vsn convert Ringo Normalization vsn convert Ringo
18.4 years ago Joern Toedling ▴ 730
0
votes
0
replies
793
views
vsn2 - update
vsn vsn
18.6 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.3k
views
vsn2 bug?
Microarray Normalization vsn Microarray Normalization vsn
updated 18.6 years ago by ★ 13k • written 18.6 years ago by ▴ 430
0
votes
4
replies
1.6k
views
VSN 2.2
Normalization vsn Normalization vsn
updated 18.6 years ago by ★ 13k • written 18.7 years ago by ▴ 330
0
votes
2
replies
1.1k
views
getting hist(abatch) results for exprset
Normalization affy vsn Normalization affy vsn
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 80
0
votes
0
replies
826
views
bioc-announce: vsn 2
Classification vsn Classification vsn
18.8 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
734
views
expression sets with probe names
probe vsn probe vsn
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ★ 1.3k
0
votes
0
replies
1.2k
views
What is a good method for analyzing differential expression from Illumina BeadStudio summary data?
Normalization GO affy vsn limma beadarray lumi Normalization GO affy vsn limma lumi
18.8 years ago Gordon Smyth 53k
0
votes
1
reply
1.3k
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ★ 1.3k
0
votes
0
replies
916
views
Comparing to background
Organism vsn limma Organism vsn limma
19.1 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
999
views
Comparing to background
Organism vsn limma Organism vsn limma
19.1 years ago Sturgill, David NIH/NIDDK [C] ▴ 10
172 results • Page 2 of 4
Recent ...
Replies
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Locations • All
United States, 4 minutes ago
The city by the bay, 42 minutes ago
United States, 1 hour ago
Barcelona, Spain, 3 hours ago
WEHI, Melbourne, Australia, 3 hours ago
Traffic: 1302 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6