Showing : vsn • reset
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4
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VSN exclusion of probes
probe vsn oligo probe vsn oligo
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 330
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8
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2.7k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 19.1 years ago by ▴ 190 • written 19.1 years ago by ★ 2.9k
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1.2k
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method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
19.3 years ago k. brand ▴ 420
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1.2k
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4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
19.3 years ago k. brand ▴ 420
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0
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970
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.5 years ago Wolfgang Huber ★ 13k
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0
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890
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
19.5 years ago Alessio Venier ▴ 40
0
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1
reply
918
views
vsn and RMA-affy ...?
Normalization affy vsn Normalization affy vsn
updated 19.6 years ago by ★ 13k • written 19.6 years ago by ▴ 310
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2
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2.0k
views
vsn on log2 transformed data?
vsn vsn
updated 19.6 years ago by ★ 13k • written 19.6 years ago by ▴ 50
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0
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1.2k
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limma, marray and Agilent 44K
Normalization Biobase vsn limma marray Normalization Biobase vsn limma marray
19.7 years ago Nataliya Yeremenko ▴ 100
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0
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1.1k
views
Limma, marray and Agilent 44K
Normalization Biobase vsn limma marray convert Normalization Biobase vsn limma marray
19.7 years ago Nataliya Yeremenko ▴ 10
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0
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2.2k
views
LIMMA: choice of offset value for background correction method "normexp"
vsn limma vsn limma
19.8 years ago Gordon Smyth 53k
0
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4
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1.8k
views
Normalization of 2 color Nimblegen array
vsn vsn
updated 19.8 years ago by ▴ 60 • written 19.8 years ago by ▴ 490
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0
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869
views
normalization of duplicate spots
Normalization vsn limma PROcess Normalization vsn limma PROcess
19.9 years ago Jianping Jin ▴ 890
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3
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3.1k
views
Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.9 years ago McGee, Monnie ▴ 300
0
votes
1
reply
1.2k
views
Help to analyse a complex experiment
Genetics Normalization vsn limma Genetics Normalization vsn limma
updated 19.9 years ago by ★ 6.0k • written 19.9 years ago by ▴ 770
0
votes
1
reply
986
views
Using vsn to normalize marrayRaw object
vsn vsn
updated 20.0 years ago by ★ 13k • written 20.0 years ago by ▴ 20
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0
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878
views
IQR question
vsn vsn
20.1 years ago Jianping Jin ▴ 890
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votes
0
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643
views
Single-Channel Normalization using Bioconductor
Normalization affy vsn limma Normalization affy vsn limma
20.1 years ago Gordon Smyth 53k
0
votes
1
reply
828
views
normalization of colonCA data
vsn vsn
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ▴ 30
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votes
1
reply
966
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn gcrma matchprobes plier vsn gcrma matchprobes plier
updated 20.4 years ago by 68k • written 20.4 years ago by ▴ 350
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1
reply
2.5k
views
Removing batch effects
vsn gcrma vsn gcrma
updated 20.4 years ago by ▴ 210 • written 20.4 years ago by ▴ 310
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votes
0
replies
984
views
GCRMA on MOE430 2.0
Normalization vsn gcrma Normalization vsn gcrma
20.5 years ago wefelmeyer@web.de ▴ 20
0
votes
0
replies
1.3k
views
differences or 1-channel (was Re: Agilent Arrays)
Normalization GO probe affy affydata vsn limma marray BEAT Normalization GO probe affy
20.5 years ago Naomi Altman ★ 6.0k
0
votes
3
replies
2.1k
views
how to normalize by columns
Normalization affy vsn Normalization affy vsn
updated 20.6 years ago by 53k • written 20.6 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Error installing genefilter
annotate genefilter affy vsn annotate genefilter affy vsn
updated 20.6 years ago by ★ 13k • written 20.6 years ago by ▴ 770
0
votes
3
replies
1.3k
views
quality data check
affy vsn limma affy vsn limma
updated 20.6 years ago by 21k • written 20.6 years ago by ▴ 770
0
votes
2
replies
1.1k
views
Error loading some BioC packages !
vsn vsn
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 540
0
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2
replies
1.4k
views
help in arrayMagic?
vsn vsn
updated 20.8 years ago by ▴ 40 • written 20.8 years ago by ▴ 30
0
votes
2
replies
1.4k
views
normalizeQuantiles : log2 or not??
Normalization vsn Normalization vsn
20.9 years ago Marcelo Luiz de Laia ▴ 770
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3
replies
1.7k
views
vsn in limma or marray/arrayMagic
Normalization vsn limma marray Normalization vsn limma marray
20.9 years ago A.E.Schiel@lumc.nl ▴ 100
0
votes
1
reply
1.5k
views
normalizaton between studies
Normalization vsn DOSE Normalization vsn DOSE
updated 21.1 years ago by ▴ 10 • written 21.1 years ago by ▴ 620
0
votes
0
replies
786
views
function log.na() removed from package vsn >= 1.5.1
vsn marray vsn marray
21.2 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.3k
views
VSN error : 'ny' does not seem to be resulting from vsn
vsn vsn
updated 21.2 years ago by ★ 13k • written 21.2 years ago by ★ 1.1k
0
votes
0
replies
1.4k
views
vsn vs quantiles, bimodal data
Normalization vsn codelink Normalization vsn codelink
21.4 years ago Rohit Ghai ▴ 80
0
votes
1
reply
1.2k
views
VSN combined with RMA
Normalization vsn Normalization vsn
updated 21.5 years ago by ★ 2.3k • written 21.5 years ago by ▴ 90
0
votes
1
reply
1.2k
views
number of affy-chips needed to fit rma model
vsn vsn
updated 21.5 years ago by ★ 2.3k • written 21.5 years ago by ▴ 430
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votes
0
replies
1.2k
views
Question regarding bg correction/normalization/summarization
Normalization Cancer probe affy vsn plier Normalization Cancer probe affy vsn plier
21.5 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
849
views
Question regarding bg correction/normalization/summarization
Normalization affy vsn Normalization affy vsn
21.5 years ago Tova Fuller ▴ 10
0
votes
0
replies
904
views
Re: RMA vs VSN
Normalization Preprocessing Cancer probe affy vsn gcrma Normalization Preprocessing probe
21.5 years ago Wolfgang Huber ★ 13k
0
votes
6
replies
2.5k
views
RMA vs VSN
Preprocessing vsn Preprocessing vsn
21.5 years ago Roger Vallejo ▴ 120
0
votes
1
reply
1.2k
views
Installation of version 1.4: vsn
vsn vsn
updated 21.6 years ago by ▴ 30 • written 21.6 years ago by ▴ 220
0
votes
1
reply
1.1k
views
vsn problem again...
affy vsn affy vsn
updated 21.6 years ago by 68k • written 21.6 years ago by ▴ 110
0
votes
2
replies
1.4k
views
vsn procedure error
vsn vsn
updated 21.6 years ago by ▴ 360 • written 21.6 years ago by ▴ 110
0
votes
1
reply
1.6k
views
Normalizing single-channel data [was: is my normalization right?]
Genetics Normalization GO vsn limma Genetics Normalization GO vsn limma
updated 21.6 years ago by ▴ 90 • written 21.6 years ago by 53k
0
votes
0
replies
904
views
Normalization with common reference
Normalization Cancer vsn GeneSpring Normalization Cancer vsn GeneSpring
21.6 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.0k
views
Release 1.4 - packages missing?
GO reposTools vsn GO reposTools vsn
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 110
0
votes
0
replies
3.1k
views
Re: vsn error L-BFGS-B needs finite values of fn
Cancer vsn arrayMagic Cancer vsn arrayMagic
21.6 years ago Wolfgang Huber ★ 13k
0
votes
4
replies
1.9k
views
Re: technical replicates (again!): a summary
Microarray GO Cancer vsn Microarray GO Cancer vsn
updated 21.8 years ago by ★ 1.1k • written 21.8 years ago by 53k
0
votes
0
replies
1.4k
views
technical replicates (again!): a summary
Microarray GO Preprocessing Cancer vsn Microarray GO Preprocessing Cancer vsn
21.8 years ago Ramon Diaz ★ 1.1k
0
votes
2
replies
2.2k
views
technical replicates (again!): a summary
GO Cancer vsn GO Cancer vsn
updated 21.8 years ago by ★ 6.0k • written 21.8 years ago by ★ 1.1k
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
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Limma-voom sample weights and impact on DEG numbers
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