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vsn2
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Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn
vsn
Normalization
vsn2
Proteomics
3.0 years ago
Arend
▴ 10
2
votes
3
replies
1.6k
views
one stratum from vsn2
vsn
vsn2
onestratum
updated 5.0 years ago by
Wolfgang Huber
★ 13k • written 5.0 years ago by
pros_vs_chur
• 0
1
vote
2
replies
1.7k
views
Bug in vsn2 in package vsn?
vsn
vsn2
updated 8.9 years ago by
Wolfgang Huber
★ 13k • written 8.9 years ago by
Peter Langfelder
★ 3.0k
1
vote
5
replies
3.7k
views
significance of changes in TMT proteomics data using vsn2 and limma
limma
vsn2
updated 10.3 years ago by
Ryan C. Thompson
★ 7.9k • written 10.3 years ago by
lukas.burger
• 0
4
votes
6
replies
2.4k
views
rounding issues using the VSN package
vsn2
limma
updated 10.6 years ago by
Wolfgang Huber
★ 13k • written 10.6 years ago by
aurelien
▴ 10
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Comment: Pairwise comparison of multiple groups with different base
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ja569116
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Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
TikTsossakaas33ocissalpc
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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