Bioconductor Vsn2

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justvsn vsn Normalization vsn2 Proteomics

2.7 years ago Arend ▴ 10

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vsn vsn2 onestratum

updated 4.6 years ago by Wolfgang Huber ★ 13k • written 4.6 years ago by pros_vs_chur • 0

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vsn vsn2

updated 8.6 years ago by Wolfgang Huber ★ 13k • written 8.6 years ago by Peter Langfelder ★ 3.0k

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limma vsn2

updated 10.0 years ago by Ryan C. Thompson ★ 7.9k • written 10.0 years ago by lukas.burger • 0

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vsn2 limma

updated 10.2 years ago by Wolfgang Huber ★ 13k • written 10.2 years ago by aurelien ▴ 10

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Answer: Postdoctoral Research Position in Cancer Genomics at Dana-Farber Cancer Institut by Piona • 0

A postdoctoral position in cancer genomics at the Guo-Cheng Yuan Lab sounds like an amazing career move. Their work combines computational …

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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Popular Question to Assa Yeroslaviz ★ 1.5k