Bioconductor Vsn2

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justvsn vsn Normalization vsn2 Proteomics

3.1 years ago Arend ▴ 10

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vsn vsn2 onestratum

updated 5.1 years ago by Wolfgang Huber ★ 13k • written 5.1 years ago by pros_vs_chur • 0

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vsn vsn2

updated 9.0 years ago by Wolfgang Huber ★ 13k • written 9.0 years ago by Peter Langfelder ★ 3.0k

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limma vsn2

updated 10.4 years ago by Ryan C. Thompson ★ 7.9k • written 10.4 years ago by lukas.burger • 0

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vsn2 limma

updated 10.6 years ago by Wolfgang Huber ★ 13k • written 10.6 years ago by aurelien ▴ 10

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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