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vsn2
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Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn
vsn
Normalization
vsn2
Proteomics
16 months ago • updated 15 months ago
Arend
▴ 10
2
votes
3
replies
1.1k
views
one stratum from vsn2
vsn
vsn2
onestratum
updated 3.3 years ago by
Wolfgang Huber
★ 13k • written 3.3 years ago by
pros_vs_chur
• 0
1
vote
2
replies
1.2k
views
Bug in vsn2 in package vsn?
vsn
vsn2
updated 7.2 years ago by
Wolfgang Huber
★ 13k • written 7.2 years ago by
Peter Langfelder
★ 3.0k
1
vote
5
replies
2.9k
views
significance of changes in TMT proteomics data using vsn2 and limma
limma
vsn2
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
lukas.burger
• 0
4
votes
6
replies
1.8k
views
rounding issues using the VSN package
vsn2
limma
updated 8.8 years ago by
Wolfgang Huber
★ 13k • written 8.9 years ago by
aurelien
▴ 10
5 results • Page
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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