Showing : zero-inflated • reset
2
votes
9
replies
1.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 4.8 years ago by ▴ 890 • written 4.8 years ago by ▴ 70
4
votes
3
replies
1.3k
views
Analyzing microbiome data (many zero-counts) using DESeq2
DESeq2 microbiome zero-inflated
updated 5.9 years ago by 36k • written 5.9 years ago by • 0
2 results • Page 1 of 1
Recent ...
Replies
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0
Thanks for your excellent reply sir! But there are still some points confused me. (1).dbGetQuery get 93 kinds of probes. Would be okay for …
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook by Kevin Blighe 3.5k
Great! problem solved, then?
Comment: Quantile Normalization after rma or not? by Yang Shi • 0
Got that sir! Really thank you!
Answer: Is it necessary to standardize Combat in R? by James W. MacDonald 59k
If you already have normalized data, then there is no reason to do something else like centering or scaling the data.
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by James W. MacDonald 59k
There are some QC probes that you might use. ``` > library(pd.hg.u219) > library(DBI) > con <- db(pd.hg.u219) > dbListTables(con) […
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Comment: Quantile Normalization after rma or not?
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
Awards • All
Scholar to James W. MacDonald 59k
Popular Question to Rory Stark ★ 4.4k
Popular Question to Gyan Prakash Mishra • 0
Scholar to ATpoint ★ 1.2k
Teacher to Gordon Smyth 45k
Locations • All
Switzerland, 1 minute ago
United States, 2 minutes ago
Seattle, WA, United States, 8 minutes ago
Zheng Zhou, 9 minutes ago
United States, 10 minutes ago
Traffic: 700 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6