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ruv
•
reset
1
vote
2
replies
498
views
RUV4 for microarrays
RUV4
RUV
Microarray
15 months ago
Antonio
• 0
5
votes
6
replies
737
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 23 months ago by
James W. MacDonald
60k • written 23 months ago by
karissa.barthelson
▴ 20
0
votes
1
reply
862
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 2.3 years ago by
hermidalc
▴ 10 • written 3.0 years ago by
raf4
▴ 20
0
votes
3
replies
412
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 2.5 years ago by
tmms
• 0 • written 2.5 years ago by
f_pardow
• 0
0
votes
1
reply
568
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 2.9 years ago by
Michael Love
37k • written 2.9 years ago by
r.tom
• 0
0
votes
0
replies
454
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
4.0 years ago
peter.fransquet
• 0
0
votes
0
replies
488
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
4.3 years ago
RC
• 0
0
votes
0
replies
437
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
4.3 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
1.7k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 5.0 years ago by
davide risso
▴ 890 • written 5.0 years ago by
Nik Tuzov
▴ 70
1
vote
3
replies
1.5k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
5.0 years ago
Nik Tuzov
▴ 70
0
votes
0
replies
607
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
5.1 years ago
manish20072013
• 0
3
votes
4
replies
2.4k
views
Single cells batch effects
RUV
single cell
batch effect
5.4 years ago
ribioinfo
▴ 100
0
votes
0
replies
661
views
Has anyone used the RUV package for Microbiome data?
ruv
5.5 years ago
sasha
• 0
0
votes
1
reply
1.7k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 5.5 years ago by
davide risso
▴ 890 • written 5.6 years ago by
weiwsmiling
• 0
0
votes
0
replies
710
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
5.7 years ago
carleshf
▴ 10
2
votes
1
reply
1.0k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
6.1 years ago
anthonycolombo60
• 0
0
votes
5
replies
1.6k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
7.1 years ago • updated 7.0 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.2k
views
normalised data after RUV2( )
ruv
microarray
updated 7.1 years ago by
gthm
▴ 20 • written 7.3 years ago by
Pauly Lin
▴ 120
3
votes
2
replies
2.1k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 7.3 years ago by
davide risso
▴ 890 • written 7.3 years ago by
Pauly Lin
▴ 120
1
vote
9
replies
1.7k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
7.3 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
Recent ...
Replies
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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