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ruv
•
reset
0
votes
1
reply
1.1k
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 19 months ago by
Michael Love
43k • written 19 months ago by
Ειρήνη
• 0
1
vote
2
replies
2.4k
views
RUV4 for microarrays
RUV4
RUV
Microarray
4.8 years ago
Antonio
• 0
5
votes
6
replies
2.5k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
2.4k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 5.8 years ago by
hermidalc
▴ 20 • written 6.6 years ago by
raf4
▴ 30
0
votes
3
replies
1.7k
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 6.0 years ago by
tmms
• 0 • written 6.0 years ago by
f_pardow
• 0
0
votes
1
reply
1.7k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
r.tom
• 0
0
votes
0
replies
1.4k
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
7.5 years ago
peter.fransquet
• 0
0
votes
0
replies
1.3k
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
7.8 years ago
RC
• 0
0
votes
0
replies
1.6k
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
7.8 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
3.9k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 8.5 years ago by
davide risso
▴ 980 • written 8.6 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
3.4k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
8.6 years ago
Nik Tuzov
▴ 90
0
votes
0
replies
1.3k
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
8.7 years ago
manish20072013
• 0
3
votes
4
replies
4.1k
views
Single cells batch effects
RUV
single cell
batch effect
8.9 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.4k
views
Has anyone used the RUV package for Microbiome data?
ruv
9.0 years ago
sasha
• 0
0
votes
1
reply
3.0k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 9.1 years ago by
davide risso
▴ 980 • written 9.2 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.5k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
9.2 years ago
carleshf
• 0
2
votes
1
reply
2.3k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
9.6 years ago
anthonycolombo60
• 0
0
votes
5
replies
3.0k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
10.6 years ago • updated 10.5 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
2.1k
views
normalised data after RUV2( )
ruv
microarray
updated 10.6 years ago by
gthm
▴ 30 • written 10.8 years ago by
Pauly Lin
▴ 160
3
votes
2
replies
3.3k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 10.8 years ago by
davide risso
▴ 980 • written 10.8 years ago by
Pauly Lin
▴ 160
1
vote
9
replies
4.1k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
10.8 years ago
sergio.espeso-gil
• 0
21 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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