Showing : ruv • reset
1
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2
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1.3k
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RUV4 for microarrays
RUV4 RUV Microarray
3.0 years ago Antonio • 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
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1
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1.6k
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Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.0 years ago by ▴ 20 • written 4.7 years ago by ▴ 20
0
votes
3
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942
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 4.2 years ago by • 0 • written 4.2 years ago by • 0
0
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1
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1.2k
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Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 4.5 years ago by 41k • written 4.5 years ago by • 0
0
votes
0
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892
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
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0
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883
views
which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
5.9 years ago RC • 0
0
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0
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898
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
2
votes
9
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2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 80
1
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3
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2.2k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.7 years ago Nik Tuzov ▴ 80
0
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0
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904
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Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
6.8 years ago manish20072013 • 0
3
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4
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3.1k
views
Single cells batch effects
RUV single cell batch effect
7.1 years ago ribioinfo ▴ 100
0
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0
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982
views
Has anyone used the RUV package for Microbiome data?
ruv
7.1 years ago sasha • 0
0
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1
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2.3k
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Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 7.2 years ago by ▴ 950 • written 7.3 years ago by • 0
0
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0
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1.1k
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Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
7.3 years ago carleshf ▴ 10
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.8 years ago anthonycolombo60 • 0
0
votes
5
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2.2k
views
RUVseq for microRNAs
ruvseq ruv microrna
8.7 years ago sergio.espeso-gil • 0
0
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1
reply
1.6k
views
normalised data after RUV2( )
ruv microarray
updated 8.8 years ago by ▴ 30 • written 8.9 years ago by ▴ 150
3
votes
2
replies
2.6k
views
Normalisation before RUVg and RUV2?
ruvseq ruv
updated 8.9 years ago by ▴ 950 • written 8.9 years ago by ▴ 150
1
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9
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2.6k
views
RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
9.0 years ago sergio.espeso-gil • 0
20 results • Page 1 of 1
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
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Thanks Peter!
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Thank you!
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They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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