Showing : ruv • reset
1
vote
2
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498
views
RUV4 for microarrays
RUV4 RUV Microarray
15 months ago Antonio • 0
5
votes
6
replies
737
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 23 months ago by 60k • written 23 months ago by ▴ 20
0
votes
1
reply
862
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 2.3 years ago by ▴ 10 • written 3.0 years ago by ▴ 20
0
votes
3
replies
412
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 2.5 years ago by • 0 • written 2.5 years ago by • 0
0
votes
1
reply
568
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 2.9 years ago by 37k • written 2.9 years ago by • 0
0
votes
0
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454
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
4.0 years ago peter.fransquet • 0
0
votes
0
replies
488
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
4.3 years ago RC • 0
0
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0
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437
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
4.3 years ago Taub, Margaret ▴ 10
2
votes
9
replies
1.7k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 5.0 years ago by ▴ 890 • written 5.0 years ago by ▴ 70
1
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3
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1.5k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
5.0 years ago Nik Tuzov ▴ 70
0
votes
0
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607
views
Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
5.1 years ago manish20072013 • 0
3
votes
4
replies
2.4k
views
Single cells batch effects
RUV single cell batch effect
5.4 years ago ribioinfo ▴ 100
0
votes
0
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661
views
Has anyone used the RUV package for Microbiome data?
ruv
5.5 years ago sasha • 0
0
votes
1
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1.7k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 5.5 years ago by ▴ 890 • written 5.6 years ago by • 0
0
votes
0
replies
710
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
5.7 years ago carleshf ▴ 10
2
votes
1
reply
1.0k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
6.1 years ago anthonycolombo60 • 0
0
votes
5
replies
1.6k
views
RUVseq for microRNAs
ruvseq ruv microrna
7.1 years ago • updated 7.0 years ago sergio.espeso-gil • 0
0
votes
1
reply
1.2k
views
normalised data after RUV2( )
ruv microarray
updated 7.1 years ago by ▴ 20 • written 7.3 years ago by ▴ 120
3
votes
2
replies
2.1k
views
Normalisation before RUVg and RUV2?
ruvseq ruv
updated 7.3 years ago by ▴ 890 • written 7.3 years ago by ▴ 120
1
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9
replies
1.7k
views
RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
7.3 years ago sergio.espeso-gil • 0
20 results • Page 1 of 1
Recent ...
Replies
Answer: mapToAlignments_issue by Hervé Pagès 15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0
Worked well under pROC. Thank you
Comment: errors in annotation by James W. MacDonald 60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler? by Guido Hooiveld ★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
Awards • All
Popular Question to Gordon Smyth 46k
Popular Question to gv ▴ 40
Scholar to Hervé Pagès 15k
Popular Question to ta_awwad ▴ 10
Scholar to k.vitting.seerup ▴ 120
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