Showing : ruv • reset
1
vote
2
replies
305
views
RUV4 for microarrays
RUV4 RUV Microarray
4 months ago Antonio • 0
5
votes
6
replies
462
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 12 months ago by 58k • written 12 months ago by ▴ 20
0
votes
1
reply
532
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 17 months ago by • 0 • written 2.1 years ago by ▴ 20
0
votes
3
replies
268
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 19 months ago by • 0 • written 19 months ago by • 0
0
votes
1
reply
341
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 24 months ago by 34k • written 24 months ago by • 0
0
votes
0
replies
350
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
3.1 years ago peter.fransquet • 0
0
votes
0
replies
383
views
which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
3.4 years ago RC • 0
0
votes
0
replies
344
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
3.4 years ago Taub, Margaret ▴ 10
2
votes
9
replies
1.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 4.1 years ago by ▴ 870 • written 4.1 years ago by ▴ 70
1
vote
3
replies
1.2k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
4.2 years ago • updated 4.1 years ago Nik Tuzov ▴ 70
0
votes
0
replies
532
views
Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
4.2 years ago manish20072013 • 0
3
votes
4
replies
1.9k
views
Single cells batch effects
RUV single cell batch effect
4.5 years ago ribioinfo ▴ 90
0
votes
0
replies
574
views
Has anyone used the RUV package for Microbiome data?
ruv
4.6 years ago sasha • 0
0
votes
1
reply
1.4k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 4.6 years ago by ▴ 870 • written 4.7 years ago by • 0
0
votes
0
replies
609
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
4.8 years ago carleshf ▴ 10
2
votes
1
reply
843
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
5.2 years ago anthonycolombo60 • 0
0
votes
5
replies
1.3k
views
RUVseq for microRNAs
ruvseq ruv microrna
6.2 years ago • updated 6.1 years ago sergio.espeso-gil • 0
0
votes
1
reply
1.1k
views
normalised data after RUV2( )
ruv microarray
updated 6.2 years ago by ▴ 20 • written 6.4 years ago by ▴ 120
3
votes
2
replies
1.9k
views
Normalisation before RUVg and RUV2?
ruvseq ruv
updated 6.4 years ago by ▴ 870 • written 6.4 years ago by ▴ 120
1
vote
9
replies
1.5k
views
RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
6.4 years ago sergio.espeso-gil • 0
20 results • Page 1 of 1
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Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, Indeed you were using an outdated version of the package. Regarding how to install current release version, please read first carefull…
Answer: Unable to install Bioconductor packages by shepherl 2.8k
This normally occurs when R was installed with a different account or an admin account. Unless on this account you won't be able to update…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
I tried to install the latest version of GenomicScores (2.4.0) by downloading the tar.gz and running `install.packages('GenomicScores_2.4.0…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
Thanks for the quick response. Below is my sessionInfo R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) …
Answer: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, At this moment (9:30am CET) I can't reproduce this error with the current release version of the package. I have executed the follow…
Votes
Comment: Extracting normalized counts in MEDIPS
Comment: "full model matrix is less than full rank"
A: Extracting normalized counts in MEDIPS
Answer: "full model matrix is less than full rank"
Comment: Unique GPos taking into account mcols
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