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ruv
•
reset
1
vote
2
replies
1.0k
views
RUV4 for microarrays
RUV4
RUV
Microarray
2.4 years ago
Antonio
• 0
5
votes
6
replies
1.3k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 3.0 years ago by
James W. MacDonald
63k • written 3.0 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.3k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 3.4 years ago by
hermidalc
▴ 20 • written 4.2 years ago by
raf4
▴ 20
0
votes
3
replies
732
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 3.6 years ago by
tmms
• 0 • written 3.6 years ago by
f_pardow
• 0
0
votes
1
reply
978
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 4.0 years ago by
Michael Love
40k • written 4.0 years ago by
r.tom
• 0
0
votes
0
replies
719
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.1 years ago
peter.fransquet
• 0
0
votes
0
replies
720
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
5.4 years ago
RC
• 0
0
votes
0
replies
745
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
5.4 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
2.2k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.2 years ago by
davide risso
▴ 920 • written 6.2 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
1.9k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.2 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
779
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
6.3 years ago
manish20072013
• 0
3
votes
4
replies
2.9k
views
Single cells batch effects
RUV
single cell
batch effect
6.5 years ago
ribioinfo
▴ 100
0
votes
0
replies
864
views
Has anyone used the RUV package for Microbiome data?
ruv
6.6 years ago
sasha
• 0
0
votes
1
reply
2.0k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 6.7 years ago by
davide risso
▴ 920 • written 6.8 years ago by
weiwsmiling
• 0
0
votes
0
replies
937
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
6.8 years ago
carleshf
▴ 10
2
votes
1
reply
1.3k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.2 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.0k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
8.2 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.4k
views
normalised data after RUV2( )
ruv
microarray
updated 8.2 years ago by
gthm
▴ 30 • written 8.4 years ago by
Pauly Lin
▴ 150
3
votes
2
replies
2.4k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 8.4 years ago by
davide risso
▴ 920 • written 8.4 years ago by
Pauly Lin
▴ 150
1
vote
9
replies
2.2k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
8.4 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
Recent ...
Replies
Answer: tximport error: vroom
by
Michael Love
40k
Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).
Comment: tximport error: vroom
by
Kevin Blighe
3.8k
Cross-posted: https://www.biostars.org/p/9576578/
Comment: Exporting DESeq2 filtered results
by
James W. MacDonald
63k
I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…
Votes
Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
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