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Answer: Answer: small RNA counts
4.0 years ago hauken_heyken ▴ 80
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Comment: Comment: S4Vectors, strange metadata behavior
4.1 years ago hauken_heyken ▴ 80
2
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3
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1.6k
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S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 80
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Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome ORFik getSeq
4.7 years ago hauken_heyken ▴ 80
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Answer: Answer: Does there exists a getSeq like function for ranges that wrap around end to star
4.7 years ago hauken_heyken ▴ 80
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2.6k
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Comment: Comment: Does there exists a getSeq like function for ranges that wrap around end to star
4.7 years ago hauken_heyken ▴ 80
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1.7k
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Answer: Answer: Error when using ORFik: findORFsFasta gives wrong start and stop codon
4.7 years ago hauken_heyken ▴ 80
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Comment: Comment: Error when using ORFik: findORFsFasta gives wrong start and stop codon
4.7 years ago hauken_heyken ▴ 80
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Comment: Comment: pmapToTranscripts for alternative isoforms
4.8 years ago hauken_heyken ▴ 80
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21k
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Comment: C: R studio input style for generating heatmap (RNAseq)
5.8 years ago hauken_heyken ▴ 80
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1
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21k
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Comment: C: R studio input style for generating heatmap (RNAseq)
5.8 years ago hauken_heyken ▴ 80
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3
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5.5k
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Rsubread, Error in featureCounts paired end
Rsubread paired end featureCounts
updated 6.4 years ago by ★ 3.6k • written 6.4 years ago by ▴ 80
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1
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2.5k
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Answer: A: invalid class GRanges object: 1: 'x@seqnames' is not parallel to 'x
6.7 years ago hauken_heyken ▴ 80
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Answer: A: Subsetting Rle with ORF-sequence-positions by the 3 frames
7.6 years ago hauken_heyken ▴ 80
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1
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1.6k
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Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
7.7 years ago • updated 7.6 years ago hauken_heyken ▴ 80
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Comment: C: extending GenomicRanges::reduce warning, why ?
7.8 years ago hauken_heyken ▴ 80
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2
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1.7k
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extending GenomicRanges::reduce warning, why ?
GenomicRanges reduce setMethod setGeneric
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 80
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4.3k
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Answer: A: Upgrade bioconductor 3.2 to 3.3
7.9 years ago hauken_heyken ▴ 80
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1.5k
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Comment: C: Rcpp adding circular ranges to GRanges object in c++
8.0 years ago hauken_heyken ▴ 80
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1
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1.5k
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Rcpp adding circular ranges to GRanges object in c++
GRanges circular rcpp IRanges
8.0 years ago hauken_heyken ▴ 80
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.1 years ago hauken_heyken ▴ 80
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1
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4.6k
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Comment: C: How to filter all column using Loop
8.1 years ago hauken_heyken ▴ 80
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4.4k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.1 years ago hauken_heyken ▴ 80
0
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1
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4.6k
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Answer: A: How to filter all column using Loop
8.1 years ago hauken_heyken ▴ 80
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4.6k
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Comment: A: How to filter all column using Loop
8.1 years ago hauken_heyken ▴ 80
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1
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2.2k
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Comment: C: Accessing GRangesList rows in Rcpp
8.1 years ago hauken_heyken ▴ 80
3
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6
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2.2k
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Accessing GRangesList rows in Rcpp
Rcpp GRangesList
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 80
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2.2k
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Comment: C: Accessing GRangesList rows in Rcpp
8.1 years ago hauken_heyken ▴ 80
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2.2k
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Comment: C: Accessing GRangesList rows in Rcpp
8.1 years ago hauken_heyken ▴ 80
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1.8k
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Comment: C: Weaknesses with GRanges data type, or just me ?
8.1 years ago hauken_heyken ▴ 80
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2
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1.8k
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Comment: C: Weaknesses with GRanges data type, or just me ?
8.1 years ago hauken_heyken ▴ 80
2
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5
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1.8k
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Weaknesses with GRanges data type, or just me ?
GRangeslist GRanges makeGrangesFromDataFrame
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 80
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.1 years ago hauken_heyken ▴ 80
4
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17
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4.4k
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How to construct a valid GRanges object from RCPP and pass back to R
GRanges IRanges RCPP Constructor
updated 8.1 years ago by ▴ 10 • written 8.2 years ago by ▴ 80
1
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1
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1.5k
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Finding distance between end of all ORFs in utr and start of first cds exon in transcript coordinates
granges distance
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 80
6
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2
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1.2k
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Combine 5' leaders and 1st exon of cds into GRangesList
GRanges mapToTranscripts
8.1 years ago hauken_heyken ▴ 80
1
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0
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1.2k
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Answer: A: Combine 5' leaders and 1st exon of cds into GRangesList
8.1 years ago hauken_heyken ▴ 80
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0
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4.4k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.2 years ago hauken_heyken ▴ 80
0
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1
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4.4k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.2 years ago hauken_heyken ▴ 80
0
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1
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4.4k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 80
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4.4k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.2 years ago hauken_heyken ▴ 80
0
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0
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4.4k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
8.2 years ago hauken_heyken ▴ 80
0
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1
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4.4k
views
Comment: A: How to construct a valid GRanges object from RCPP and pass back to R
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 80
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