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Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome ORFik getSeq
4 weeks ago • updated 22 days ago hauken_heyken ▴ 80
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143
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Answer: Answer: Does there exists a getSeq like function for ranges that wrap around end to star
22 days ago hauken_heyken ▴ 80
0
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0
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143
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Comment: Comment: Does there exists a getSeq like function for ranges that wrap around end to star
23 days ago hauken_heyken ▴ 80
1
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0
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101
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Answer: Answer: Error when using ORFik: findORFsFasta gives wrong start and stop codon
4 weeks ago hauken_heyken ▴ 80
0
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0
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101
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Comment: Comment: Error when using ORFik: findORFsFasta gives wrong start and stop codon
4 weeks ago hauken_heyken ▴ 80
0
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0
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107
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Comment: Comment: pmapToTranscripts for alternative isoforms
9 weeks ago hauken_heyken ▴ 80
0
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0
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177
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Comment: C: R studio input style for generating heatmap (RNAseq)
13 months ago hauken_heyken ▴ 80
1
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1
reply
177
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Comment: C: R studio input style for generating heatmap (RNAseq)
14 months ago hauken_heyken ▴ 80
4
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3
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875
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Rsubread, Error in featureCounts paired end
Rsubread paired end featureCounts
updated 21 months ago by ★ 3.3k • written 21 months ago by ▴ 80
2
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1
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1.0k
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Answer: A: invalid class GRanges object: 1: 'x@seqnames' is not parallel to 'x
2.0 years ago hauken_heyken ▴ 80
1
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0
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390
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Answer: A: Subsetting Rle with ORF-sequence-positions by the 3 frames
3.0 years ago hauken_heyken ▴ 80
1
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1
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390
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Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
3.0 years ago hauken_heyken ▴ 80
0
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0
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376
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Comment: C: extending GenomicRanges::reduce warning, why ?
3.1 years ago hauken_heyken ▴ 80
1
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2
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376
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extending GenomicRanges::reduce warning, why ?
GenomicRanges reduce setMethod setGeneric
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 80
0
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0
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2.2k
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Answer: A: Upgrade bioconductor 3.2 to 3.3
3.2 years ago hauken_heyken ▴ 80
0
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0
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479
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Comment: C: Rcpp adding circular ranges to GRanges object in c++
3.4 years ago hauken_heyken ▴ 80
0
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1
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479
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Rcpp adding circular ranges to GRanges object in c++
GRanges circular rcpp IRanges
3.4 years ago hauken_heyken ▴ 80
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0
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1.6k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.4 years ago hauken_heyken ▴ 80
1
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1
reply
948
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Comment: C: How to filter all column using Loop
3.4 years ago hauken_heyken ▴ 80
0
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0
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1.6k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.4 years ago hauken_heyken ▴ 80
0
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1
reply
948
views
Answer: A: How to filter all column using Loop
3.4 years ago hauken_heyken ▴ 80
0
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0
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948
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Comment: A: How to filter all column using Loop
3.4 years ago hauken_heyken ▴ 80
0
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1
reply
640
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Comment: C: Accessing GRangesList rows in Rcpp
3.5 years ago hauken_heyken ▴ 80
3
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6
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640
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Accessing GRangesList rows in Rcpp
Rcpp GRangesList
updated 3.5 years ago by 25k • written 3.5 years ago by ▴ 80
0
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0
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640
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Comment: C: Accessing GRangesList rows in Rcpp
3.5 years ago hauken_heyken ▴ 80
0
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0
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640
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Comment: C: Accessing GRangesList rows in Rcpp
3.5 years ago hauken_heyken ▴ 80
0
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1
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476
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Comment: C: Weaknesses with GRanges data type, or just me ?
3.5 years ago hauken_heyken ▴ 80
0
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2
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476
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Comment: C: Weaknesses with GRanges data type, or just me ?
3.5 years ago hauken_heyken ▴ 80
2
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5
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476
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Weaknesses with GRanges data type, or just me ?
GRangeslist GRanges makeGrangesFromDataFrame
updated 3.5 years ago by 11k • written 3.5 years ago by ▴ 80
0
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0
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1.6k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.5 years ago hauken_heyken ▴ 80
4
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17
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1.6k
views
How to construct a valid GRanges object from RCPP and pass back to R
GRanges IRanges RCPP Constructor
updated 3.5 years ago by ▴ 10 • written 3.6 years ago by ▴ 80
1
vote
1
reply
379
views
Finding distance between end of all ORFs in utr and start of first cds exon in transcript coordinates
granges distance
updated 3.5 years ago by 11k • written 3.5 years ago by ▴ 80
6
votes
2
replies
298
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Combine 5' leaders and 1st exon of cds into GRangesList
GRanges mapToTranscripts
3.5 years ago hauken_heyken ▴ 80
1
vote
0
replies
298
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Answer: A: Combine 5' leaders and 1st exon of cds into GRangesList
3.5 years ago hauken_heyken ▴ 80
0
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0
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1.6k
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Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.6 years ago hauken_heyken ▴ 80
0
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1
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1.6k
views
Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.6 years ago hauken_heyken ▴ 80
0
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1
reply
1.6k
views
Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
updated 3.6 years ago by 25k • written 3.6 years ago by ▴ 80
0
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1
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1.6k
views
Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.6 years ago hauken_heyken ▴ 80
0
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0
replies
1.6k
views
Comment: C: How to construct a valid GRanges object from RCPP and pass back to R
3.6 years ago hauken_heyken ▴ 80
0
votes
1
reply
1.6k
views
Comment: A: How to construct a valid GRanges object from RCPP and pass back to R
updated 3.6 years ago by 25k • written 3.6 years ago by ▴ 80
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