Bioconductor GetSeq

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2.1k

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circulargenome ORFik getSeq

3.9 years ago • updated 3.8 years ago hauken_heyken ▴ 80

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896

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signeR getseq

updated 5.7 years ago by renan.valieris ▴ 10 • written 5.7 years ago by TRASA • 0

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1.9k

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BSgenome getSeq

updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by rubi ▴ 110

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1.6k

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R bsgenome getseq

updated 8.0 years ago by James W. MacDonald 67k • written 8.0 years ago by pm16057 • 0

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5.8k

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dnastringset getseq

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by TimothéeFlutre ▴ 80

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1.6k

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rtracklayer NA BED getseq

9.2 years ago Dimitris Polychronopoulos ▴ 80

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2.4k

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bsgenome getseq

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by dborgesrmit • 0

7 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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