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Answer: C: mogsa on RNA-seq and ATAC-seq data
4.0 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
4.9 years ago Aedin Culhane ▴ 510
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1.1k
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Comment: C: oligo and GenericPDInfo
4.9 years ago Aedin Culhane ▴ 510
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1.1k
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Comment: C: oligo and GenericPDInfo
4.9 years ago Aedin Culhane ▴ 510
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1.1k
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Comment: C: oligo and GenericPDInfo
4.9 years ago Aedin Culhane ▴ 510
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1.1k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 4.9 years ago by 60k • written 4.9 years ago by ▴ 510
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Answer: A: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
5.3 years ago Aedin Culhane ▴ 510
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3
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Answer: A: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
5.3 years ago Aedin Culhane ▴ 510
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1
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977
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Answer: A: getBM. Get genome location for probes that do not map to genes
5.7 years ago Aedin Culhane ▴ 510
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4
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977
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getBM. Get genome location for probes that do not map to genes
biomart annotation
5.7 years ago Aedin Culhane ▴ 510
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977
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Answer: A: getBM. Get genome location for probes that do not map to genes
5.7 years ago Aedin Culhane ▴ 510
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0
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735
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Comment: A: Constellation Map from the Broad?
6.1 years ago Aedin Culhane ▴ 510
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2
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735
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Constellation Map from the Broad?
gene set analysis
6.1 years ago Aedin Culhane ▴ 510
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1.0k
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Answer: A: Error while running piano's runGSA
6.1 years ago Aedin Culhane ▴ 510
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1.5k
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Answer: A: Prior Control with Mclust package
6.1 years ago Aedin Culhane ▴ 510
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Answer: A: Prior Control with Mclust package
6.1 years ago Aedin Culhane ▴ 510
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0
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581
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Answer: A: Why are these two clustering patterns different?
6.1 years ago Aedin Culhane ▴ 510
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1.1k
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Answer: A: A very large number of diffential genes
6.7 years ago Aedin Culhane ▴ 510
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0
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1.3k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
6.7 years ago Aedin Culhane ▴ 510
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0
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1.3k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
6.7 years ago Aedin Culhane ▴ 510
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0
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1.3k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
6.7 years ago Aedin Culhane ▴ 510
0
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1
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780
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SomaticCancerAlterations:::.validate_maf, read_maf, maf2gr
updated 7.9 years ago by ★ 1.3k • written 7.9 years ago by ▴ 510
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771
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Comment: C: overview function of made4
10.0 years ago Aedin Culhane ▴ 510
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0
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723
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Question regarding MADE4 graphs
Cancer made4 Cancer made4
10.1 years ago Aedin Culhane ▴ 510
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0
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812
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Answer: A: Question regarding COA plot generated by made4 package
10.2 years ago Aedin Culhane ▴ 510
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0
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1.5k
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Comment: C: plotting a CA
10.3 years ago Aedin Culhane ▴ 510
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1
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1.5k
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Comment: C: plotting a CA
10.3 years ago Aedin Culhane ▴ 510
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1
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1.5k
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Comment: C: plotting a CA
10.3 years ago Aedin Culhane ▴ 510
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1
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1.5k
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Answer: A: plotting a CA
10.3 years ago Aedin Culhane ▴ 510
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1
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1.1k
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Comment: C: Problems accessing Ensembl archive 59 with EnsEMBL
11.6 years ago Aedin Culhane ▴ 510
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3
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1.1k
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Problems accessing Ensembl archive 59 with EnsEMBL
biomaRt biomaRt
updated 11.6 years ago by ▴ 660 • written 11.6 years ago by ▴ 510
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391
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obtain a list of possible oncogenes from the annotation, packages?
Annotation Cancer Annotation Cancer
11.6 years ago Aedin Culhane ▴ 510
0
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1
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905
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Comment: C: GEOquery: can I use getGEO to retrieve the metadata annotation only
11.6 years ago Aedin Culhane ▴ 510
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3
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905
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GEOquery: can I use getGEO to retrieve the metadata annotation only
updated 11.6 years ago by 21k • written 11.6 years ago by ▴ 510
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0
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1.4k
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Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer graph made4 Cancer graph made4
11.7 years ago Aedin Culhane ▴ 510
0
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1
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656
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limma and Rank Products: comparison of the number of results
Cancer limma Cancer limma
updated 12.4 years ago by ▴ 750 • written 12.4 years ago by ▴ 510
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1000
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Comment: C: BiomaRt error
12.9 years ago Aedin Culhane ▴ 510
0
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2
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1000
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BiomaRt error
Cancer biomaRt Cancer biomaRt
updated 12.9 years ago by ▴ 600 • written 12.9 years ago by ▴ 510
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0
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844
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Clustering of gene expression data with Pearson, coefficient
13.7 years ago Aedin Culhane ▴ 510
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0
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440
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SFI Stokes Lecturer in computational biology (Ireland)
13.9 years ago Aedin Culhane ▴ 510
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4
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1.1k
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Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph Clustering Cancer graph
updated 13.9 years ago by ▴ 460 • written 13.9 years ago by ▴ 510
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535
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PI/senior computational biologist in Ireland
14.0 years ago Aedin Culhane ▴ 510
0
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0
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1.0k
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Variance correction, coxph or cph model
Cancer Cancer
14.1 years ago Aedin Culhane ▴ 510
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0
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767
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UCD Bioinformatics & Computational Biomedicine PhD programme: applications
14.3 years ago Aedin Culhane ▴ 510
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0
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847
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about microarray batch effect and treatment effect
affy DOSE affy DOSE
14.5 years ago Aedin Culhane ▴ 510
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0
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966
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Answer: A: tweaks for the heatmap ()?
14.6 years ago Aedin Culhane ▴ 510
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0
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599
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made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
14.6 years ago Aedin Culhane ▴ 510
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0
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586
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Answer: A: heatmap_plus and distances
14.7 years ago Aedin Culhane ▴ 510
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0
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531
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Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
15.0 years ago Aedin Culhane ▴ 510
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1
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2.3k
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Comment: C: ReadAffy - Error VECTOR_ELT() can only be applied to a 'list', not a 'char'
15.0 years ago Aedin Culhane ▴ 510
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