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Answer: C: mogsa on RNA-seq and ATAC-seq data
7.7 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
8.6 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
8.6 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
8.6 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
8.6 years ago Aedin Culhane ▴ 510
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2.5k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 510
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Answer: A: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
9.0 years ago Aedin Culhane ▴ 510
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Answer: A: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
9.0 years ago Aedin Culhane ▴ 510
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Answer: A: getBM. Get genome location for probes that do not map to genes
9.4 years ago Aedin Culhane ▴ 510
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2.0k
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getBM. Get genome location for probes that do not map to genes
biomart annotation
9.4 years ago Aedin Culhane ▴ 510
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Answer: A: getBM. Get genome location for probes that do not map to genes
9.4 years ago Aedin Culhane ▴ 510
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Comment: A: Constellation Map from the Broad?
9.7 years ago Aedin Culhane ▴ 510
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1.6k
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Constellation Map from the Broad?
gene set analysis
9.7 years ago Aedin Culhane ▴ 510
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Answer: A: Error while running piano's runGSA
9.7 years ago Aedin Culhane ▴ 510
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Answer: A: Prior Control with Mclust package
9.7 years ago Aedin Culhane ▴ 510
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Answer: A: Prior Control with Mclust package
9.7 years ago Aedin Culhane ▴ 510
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Answer: A: Why are these two clustering patterns different?
9.7 years ago Aedin Culhane ▴ 510
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2.7k
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Answer: A: A very large number of diffential genes
10.4 years ago Aedin Culhane ▴ 510
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2.9k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
10.4 years ago Aedin Culhane ▴ 510
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
10.4 years ago Aedin Culhane ▴ 510
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
10.4 years ago Aedin Culhane ▴ 510
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1.3k
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SomaticCancerAlterations:::.validate_maf, read_maf, maf2gr
updated 11.6 years ago by ★ 1.3k • written 11.6 years ago by ▴ 510
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Comment: C: overview function of made4
13.7 years ago Aedin Culhane ▴ 510
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1.2k
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Question regarding MADE4 graphs
Cancer made4 Cancer made4
13.8 years ago Aedin Culhane ▴ 510
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1.5k
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Answer: A: Question regarding COA plot generated by made4 package
13.8 years ago Aedin Culhane ▴ 510
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Comment: C: plotting a CA
14.0 years ago Aedin Culhane ▴ 510
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1
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3.0k
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Comment: C: plotting a CA
14.0 years ago Aedin Culhane ▴ 510
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3.0k
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Comment: C: plotting a CA
14.0 years ago Aedin Culhane ▴ 510
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3.0k
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Answer: A: plotting a CA
14.0 years ago Aedin Culhane ▴ 510
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1
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1.8k
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Comment: C: Problems accessing Ensembl archive 59 with EnsEMBL
15.2 years ago Aedin Culhane ▴ 510
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3
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1.8k
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Problems accessing Ensembl archive 59 with EnsEMBL
biomaRt biomaRt
updated 15.2 years ago by ▴ 660 • written 15.2 years ago by ▴ 510
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764
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obtain a list of possible oncogenes from the annotation, packages?
Annotation Cancer Annotation Cancer
15.3 years ago Aedin Culhane ▴ 510
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1.9k
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Comment: C: GEOquery: can I use getGEO to retrieve the metadata annotation only
15.3 years ago Aedin Culhane ▴ 510
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3
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1.9k
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GEOquery: can I use getGEO to retrieve the metadata annotation only
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 510
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2.1k
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Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer graph made4 Cancer graph made4
15.4 years ago Aedin Culhane ▴ 510
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1
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1.2k
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limma and Rank Products: comparison of the number of results
Cancer limma Cancer limma
updated 16.0 years ago by ▴ 750 • written 16.0 years ago by ▴ 510
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1.6k
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Comment: C: BiomaRt error
16.6 years ago Aedin Culhane ▴ 510
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2
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1.6k
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BiomaRt error
Cancer biomaRt Cancer biomaRt
updated 16.6 years ago by ▴ 600 • written 16.6 years ago by ▴ 510
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1.3k
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Clustering of gene expression data with Pearson, coefficient
17.4 years ago Aedin Culhane ▴ 510
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0
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769
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SFI Stokes Lecturer in computational biology (Ireland)
17.6 years ago Aedin Culhane ▴ 510
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4
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2.1k
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Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph Clustering Cancer graph
updated 17.6 years ago by ▴ 460 • written 17.6 years ago by ▴ 510
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886
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PI/senior computational biologist in Ireland
17.7 years ago Aedin Culhane ▴ 510
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1.5k
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Variance correction, coxph or cph model
Cancer Cancer
17.8 years ago Aedin Culhane ▴ 510
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1.2k
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UCD Bioinformatics & Computational Biomedicine PhD programme: applications
17.9 years ago Aedin Culhane ▴ 510
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1.4k
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about microarray batch effect and treatment effect
affy DOSE affy DOSE
18.2 years ago Aedin Culhane ▴ 510
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1.9k
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Answer: A: tweaks for the heatmap ()?
18.3 years ago Aedin Culhane ▴ 510
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0
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1.2k
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made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
18.3 years ago Aedin Culhane ▴ 510
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0
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1.3k
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Answer: A: heatmap_plus and distances
18.4 years ago Aedin Culhane ▴ 510
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0
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1.0k
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Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
18.6 years ago Aedin Culhane ▴ 510
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1
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3.5k
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Comment: C: ReadAffy - Error VECTOR_ELT() can only be applied to a 'list', not a 'char'
18.7 years ago Aedin Culhane ▴ 510
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