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Answer: C: mogsa on RNA-seq and ATAC-seq data
5.9 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
6.8 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
6.8 years ago Aedin Culhane ▴ 510
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Comment: C: oligo and GenericPDInfo
6.8 years ago Aedin Culhane ▴ 510
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1.7k
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Comment: C: oligo and GenericPDInfo
6.8 years ago Aedin Culhane ▴ 510
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 510
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Answer: A: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
7.2 years ago Aedin Culhane ▴ 510
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Answer: A: [FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
7.2 years ago Aedin Culhane ▴ 510
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Answer: A: getBM. Get genome location for probes that do not map to genes
7.6 years ago Aedin Culhane ▴ 510
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1.4k
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getBM. Get genome location for probes that do not map to genes
biomart annotation
7.6 years ago Aedin Culhane ▴ 510
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Answer: A: getBM. Get genome location for probes that do not map to genes
7.6 years ago Aedin Culhane ▴ 510
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Comment: A: Constellation Map from the Broad?
7.9 years ago Aedin Culhane ▴ 510
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1.1k
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Constellation Map from the Broad?
gene set analysis
7.9 years ago Aedin Culhane ▴ 510
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1.6k
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Answer: A: Error while running piano's runGSA
7.9 years ago Aedin Culhane ▴ 510
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Answer: A: Prior Control with Mclust package
7.9 years ago Aedin Culhane ▴ 510
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Answer: A: Prior Control with Mclust package
7.9 years ago Aedin Culhane ▴ 510
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984
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Answer: A: Why are these two clustering patterns different?
7.9 years ago Aedin Culhane ▴ 510
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1.8k
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Answer: A: A very large number of diffential genes
8.5 years ago Aedin Culhane ▴ 510
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2.1k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
8.5 years ago Aedin Culhane ▴ 510
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2.1k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
8.5 years ago Aedin Culhane ▴ 510
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0
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2.1k
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Answer: A: What do ellipses in 'plotarrays' function represent (from made4)
8.5 years ago Aedin Culhane ▴ 510
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1
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1.0k
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SomaticCancerAlterations:::.validate_maf, read_maf, maf2gr
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 510
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Comment: C: overview function of made4
11.8 years ago Aedin Culhane ▴ 510
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977
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Question regarding MADE4 graphs
Cancer made4 Cancer made4
12.0 years ago Aedin Culhane ▴ 510
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1.1k
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Answer: A: Question regarding COA plot generated by made4 package
12.0 years ago Aedin Culhane ▴ 510
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2.2k
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Comment: C: plotting a CA
12.1 years ago Aedin Culhane ▴ 510
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2.2k
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Comment: C: plotting a CA
12.2 years ago Aedin Culhane ▴ 510
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2.2k
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Comment: C: plotting a CA
12.2 years ago Aedin Culhane ▴ 510
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2.2k
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Answer: A: plotting a CA
12.2 years ago Aedin Culhane ▴ 510
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1
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1.4k
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Comment: C: Problems accessing Ensembl archive 59 with EnsEMBL
13.4 years ago Aedin Culhane ▴ 510
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1.4k
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Problems accessing Ensembl archive 59 with EnsEMBL
biomaRt biomaRt
updated 13.4 years ago by ▴ 660 • written 13.4 years ago by ▴ 510
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591
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obtain a list of possible oncogenes from the annotation, packages?
Annotation Cancer Annotation Cancer
13.4 years ago Aedin Culhane ▴ 510
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1.4k
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Comment: C: GEOquery: can I use getGEO to retrieve the metadata annotation only
13.5 years ago Aedin Culhane ▴ 510
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3
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1.4k
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GEOquery: can I use getGEO to retrieve the metadata annotation only
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 510
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1.8k
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Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer graph made4 Cancer graph made4
13.5 years ago Aedin Culhane ▴ 510
0
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1
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891
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limma and Rank Products: comparison of the number of results
Cancer limma Cancer limma
updated 14.2 years ago by ▴ 750 • written 14.2 years ago by ▴ 510
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1.3k
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Comment: C: BiomaRt error
14.8 years ago Aedin Culhane ▴ 510
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2
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1.3k
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BiomaRt error
Cancer biomaRt Cancer biomaRt
updated 14.8 years ago by ▴ 600 • written 14.8 years ago by ▴ 510
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1.1k
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Clustering of gene expression data with Pearson, coefficient
15.6 years ago Aedin Culhane ▴ 510
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0
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579
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SFI Stokes Lecturer in computational biology (Ireland)
15.8 years ago Aedin Culhane ▴ 510
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4
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1.6k
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Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph Clustering Cancer graph
updated 15.8 years ago by ▴ 460 • written 15.8 years ago by ▴ 510
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688
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PI/senior computational biologist in Ireland
15.9 years ago Aedin Culhane ▴ 510
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0
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1.3k
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Variance correction, coxph or cph model
Cancer Cancer
16.0 years ago Aedin Culhane ▴ 510
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942
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UCD Bioinformatics & Computational Biomedicine PhD programme: applications
16.1 years ago Aedin Culhane ▴ 510
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1.1k
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about microarray batch effect and treatment effect
affy DOSE affy DOSE
16.4 years ago Aedin Culhane ▴ 510
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0
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1.4k
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Answer: A: tweaks for the heatmap ()?
16.5 years ago Aedin Culhane ▴ 510
0
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0
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860
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made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
16.5 years ago Aedin Culhane ▴ 510
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0
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967
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Answer: A: heatmap_plus and distances
16.6 years ago Aedin Culhane ▴ 510
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0
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731
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Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
16.8 years ago Aedin Culhane ▴ 510
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3.0k
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Comment: C: ReadAffy - Error VECTOR_ELT() can only be applied to a 'list', not a 'char'
16.9 years ago Aedin Culhane ▴ 510
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