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Comment: Comment: Including infectivity information to RNA-Seq analysis
5 months ago Ben ▴ 50
1
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3
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555
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Including infectivity information to RNA-Seq analysis
RNASeqData DESeq2 RNA-Seq RNASeq
updated 5 months ago by 67k • written 5 months ago by ▴ 50
2
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0
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1.2k
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Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.8 years ago Ben ▴ 50
3
votes
6
replies
1.5k
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Different contrast coding strategies in DESeq2 produce slightly different output?
DESeq2 RNASeqData DifferentialExpression
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 50
0
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1
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1.5k
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Comment: Comment: Different contrast coding strategies in DESeq2 produce slightly different output
4.0 years ago Ben ▴ 50
0
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0
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1.5k
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Comment: Comment: Different contrast coding strategies in DESeq2 produce slightly different output
4.0 years ago Ben ▴ 50
0
votes
0
replies
1.5k
views
Comment: Comment: Different contrast coding strategies in DESeq2 produce slightly different output
4.0 years ago Ben ▴ 50
4
votes
3
replies
2.2k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma voom variancePartition dream
updated 5.2 years ago by ▴ 170 • written 5.4 years ago by ▴ 50
0
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0
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1.3k
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Comment: C: Creating contrasts which do not include the reference level in limma, edgeR or D
5.4 years ago Ben ▴ 50
1
vote
4
replies
1.3k
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Creating contrasts which do not include the reference level in limma, edgeR or DESeq2
limma deseq2 edgeR
updated 5.4 years ago by 67k • written 5.4 years ago by ▴ 50
0
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0
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1.3k
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Comment: C: Creating contrasts which do not include the reference level in limma, edgeR or D
5.4 years ago Ben ▴ 50
0
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1
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1.1k
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Comment: C: Question regarding model matrix in limma.
5.4 years ago Ben ▴ 50
0
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5
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1.1k
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Question regarding model matrix in limma.
limma deseq2
updated 5.4 years ago by 67k • written 5.4 years ago by ▴ 50
0
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0
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2.2k
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Comment: C: Blocking factor in limma/voom vs. variancePartition/dream analysis.
5.4 years ago Ben ▴ 50
0
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0
replies
2.4k
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Comment: C: MDS plotting within the limma/voom workflow
5.4 years ago Ben ▴ 50
0
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1
reply
2.4k
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Comment: C: MDS plotting within the limma/voom workflow
5.4 years ago Ben ▴ 50
3
votes
4
replies
2.4k
views
MDS plotting within the limma/voom workflow
limma voom deseq2
updated 5.4 years ago by 52k • written 5.4 years ago by ▴ 50
0
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1
reply
3.3k
views
Comment: C: DESeq2::sizeFactors() function does not output the sizeFactor table.
5.8 years ago Ben ▴ 50
3
votes
6
replies
3.3k
views
DESeq2::sizeFactors() function does not output the sizeFactor table.
deseq2
updated 9 months ago by • 0 • written 5.8 years ago by ▴ 50
0
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1
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1.4k
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Comment: C: Strange lfcShrink plot when running DESeq2 workflow
6.1 years ago Ben ▴ 50
0
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3
replies
1.4k
views
Strange lfcShrink plot when running DESeq2 workflow
DESeq2 rnaseq rna-seq deseq2 deseq
6.1 years ago Ben ▴ 50
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