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Answer: A: Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
9.2 years ago Shi, Tao ▴ 720
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm vanillaice
9.2 years ago Shi, Tao ▴ 720
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Comment: C: reading .idat files using genotype.Illumina in crlmm
9.2 years ago Shi, Tao ▴ 720
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reading .idat files using genotype.Illumina in crlmm
crlmm idat
updated 9.2 years ago by ▴ 1000 • written 9.2 years ago by ▴ 720
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1.2k
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Comment: C: Results changed after DESeq2 upgrade
9.6 years ago Shi, Tao ▴ 720
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Results changed after DESeq2 upgrade
deseq2
updated 9.6 years ago by 42k • written 9.6 years ago by ▴ 720
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Answer: A: comisc in biomart
9.7 years ago Shi, Tao ▴ 720
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comisc in biomart
biomaRt
9.7 years ago Shi, Tao ▴ 720
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strange log2FoldChange estimates
RNASeq DOSE DESeq2 RNASeq DOSE DESeq2
10.1 years ago Shi, Tao ▴ 720
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Answer: A: strange log2FoldChange estimates
10.1 years ago Shi, Tao ▴ 720
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Comment: C: multiple comparison adjustment of p values in LIMMA
11.0 years ago Shi, Tao ▴ 720
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1.9k
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multiple comparison adjustment of p values in LIMMA
limma limma
updated 11.0 years ago by 51k • written 11.0 years ago by ▴ 720
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1.9k
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Comment: C: multiple comparison adjustment of p values in LIMMA
11.0 years ago Shi, Tao ▴ 720
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Comment: C: limma: NA coefficients due to missing values
11.3 years ago Shi, Tao ▴ 720
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limma: NA coefficients due to missing values
limma limma
updated 11.3 years ago by 51k • written 11.3 years ago by ▴ 720
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arrayQualityMetrics: huge object size!?
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 720
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Comment: C: arrayQualityMetrics: huge object size!?
12.5 years ago Shi, Tao ▴ 720
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993
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Fw: a bug in heatmap.plus?
13.3 years ago Shi, Tao ▴ 720
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700
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Answer: A: mapping a gene id to determine if it's ribosomal
13.4 years ago Shi, Tao ▴ 720
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755
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getSequence ensmebl biomaRt
biomaRt biomaRt
13.4 years ago Shi, Tao ▴ 720
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Comment: C: desktop workstation configuration
13.7 years ago Shi, Tao ▴ 720
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desktop workstation configuration
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ▴ 720
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Comment: C: question on "uniCox"
13.8 years ago Shi, Tao ▴ 720
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question on "uniCox"
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 720
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Cy5: methylated or unmethylated?
methylumi methylumi
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 720
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Comment: C: Cy5: methylated or unmethylated?
13.9 years ago Shi, Tao ▴ 720
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Comment: C: Simulation of the beta average
14.0 years ago Shi, Tao ▴ 720
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Comment: C: DNA-Methylation, CopyNumber Results
14.0 years ago Shi, Tao ▴ 720
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Comment: C: DNA-Methylation, CopyNumber Results
14.0 years ago Shi, Tao ▴ 720
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1.9k
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Comment: C: DNA-Methylation, CopyNumber Results
14.0 years ago Shi, Tao ▴ 720
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Answer: A: HTqPCR
14.0 years ago Shi, Tao ▴ 720
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illumina Infinium HumanMethylation27 detection-p-value
updated 14.0 years ago by ★ 1.2k • written 14.0 years ago by ▴ 720
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Comment: C: illumina Infinium HumanMethylation27 detection-p-value
14.0 years ago Shi, Tao ▴ 720
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3
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problems when using "readCcg" in "affxparser" to parse .CNCHP file
affy affy
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ▴ 720
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Comment: C: problems when using "readCcg" in "affxparser" to parse .CNCHP file
14.6 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt doesn't load RCurl automatically
15.8 years ago Shi, Tao ▴ 720
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1.3k
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biomaRt doesn't load RCurl automatically
SNP biomaRt SNP biomaRt
15.8 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt get exon intron structure of a transcrit
15.8 years ago Shi, Tao ▴ 720
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4
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2.3k
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biomaRt get exon intron structure of a transcrit
Cancer biomaRt Cancer biomaRt
15.8 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt get exon intron structure of a transcrit
15.8 years ago Shi, Tao ▴ 720
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Answer: A: gene count in a GO term
15.9 years ago Shi, Tao ▴ 720
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3
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926
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gene count in a GO term
affy affy
15.9 years ago Shi, Tao ▴ 720
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1.0k
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Answer: A: "start" filter in biomaRt
16.0 years ago Shi, Tao ▴ 720
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2
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1.0k
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"start" filter in biomaRt
16.0 years ago Shi, Tao ▴ 720
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843
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GOTERM in GO.db returns NULL
GO GO
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 720
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biomaRt:getBM error when query is large
GO GO
16.1 years ago Shi, Tao ▴ 720
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Answer: A: biomaRt:getBM error when query is large
16.1 years ago Shi, Tao ▴ 720
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2
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create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affxparser affy affxparser
16.3 years ago Shi, Tao ▴ 720
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1.5k
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Answer: A: create Affymetrix .chp file for viewing in affy Integrated Genome Browser
16.3 years ago Shi, Tao ▴ 720
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1
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1.1k
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create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affy
updated 16.3 years ago by ★ 6.5k • written 16.3 years ago by ▴ 720
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