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Comment:
Comment: GSEA preranked analysis downstream of DEseq2
2.7 years ago
changxu.fan
▴ 20
3
votes
1
reply
778
views
How to solve the "tilted tail" after DESeq2 normalization.
DESeq2
updated 2.9 years ago by
ATpoint
★ 4.6k • written 2.9 years ago by
changxu.fan
▴ 20
2
votes
4
replies
3.8k
views
How to simply change chromosome names of a GRanges object?
genomicrang
GenomicRanges
updated 3.0 years ago by
Hervé Pagès
16k • written 3.2 years ago by
changxu.fan
▴ 20
0
votes
1
reply
5.6k
views
Comment:
Comment: using DESeq2 for ATAC analyses
3.2 years ago
changxu.fan
▴ 20
2
votes
5
replies
5.6k
views
using DESeq2 for ATAC analyses
ATACSeq
DESeq2
updated 2.4 years ago by
eric.kern13
▴ 20 • written 3.2 years ago by
changxu.fan
▴ 20
0
votes
1
reply
2.3k
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Comment:
Comment: How does the design formula affect dispersion estimate in DESeq2?
3.3 years ago
changxu.fan
▴ 20
2
votes
8
replies
2.3k
views
How does the design formula affect dispersion estimate in DESeq2?
deseq2
updated 3.3 years ago by
Michael Love
43k • written 4.3 years ago by
changxu.fan
▴ 20
0
votes
1
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2.3k
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Answer:
Answer: How does the design formula affect dispersion estimate in DESeq2?
3.3 years ago
changxu.fan
▴ 20
4
votes
4
replies
4.4k
views
Best way to handle tags of bam files
GenomicAlignments
bam
Rsamtools
written 3.8 years ago by
changxu.fan
▴ 20
0
votes
1
reply
4.4k
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Answer:
Answer: Best way to handle tags of bam files
3.8 years ago
changxu.fan
▴ 20
0
votes
0
replies
4.4k
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Comment:
Comment: Best way to handle tags of bam files
3.8 years ago
changxu.fan
▴ 20
0
votes
0
replies
706
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
4.2 years ago
changxu.fan
▴ 20
2
votes
1
reply
806
views
The best pacakge to annotate a set of regions
annotate
updated 4.2 years ago by
James W. MacDonald
67k • written 4.2 years ago by
changxu.fan
▴ 20
0
votes
0
replies
2.3k
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Comment:
C: How does the design formula affect dispersion estimate in DESeq2?
4.3 years ago
changxu.fan
▴ 20
0
votes
1
reply
2.3k
views
Comment:
C: How does the design formula affect dispersion estimate in DESeq2?
4.3 years ago
changxu.fan
▴ 20
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