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1
vote
1
reply
2.4k
views
Comment:
C: SummarizedExperiment object from GEOquery obtained GSE
6.3 years ago
Sean Davis
21k
1
vote
1
reply
2.4k
views
Comment:
C: SummarizedExperiment object from GEOquery obtained GSE
6.3 years ago
Sean Davis
21k
0
votes
0
replies
2.0k
views
Comment:
C: Cannot retrieve projects from TCGA using getGDCprojects function
6.4 years ago
Sean Davis
21k
0
votes
1
reply
831
views
Comment:
C: STATegRa Minimum number of samples
6.4 years ago
Sean Davis
21k
0
votes
0
replies
1.8k
views
Answer:
A: Intron length per transcript using GenomicFeatures
6.4 years ago
Sean Davis
21k
0
votes
1
reply
1.2k
views
Answer:
C: Where is the "RNAseq2 level 3" data
6.4 years ago
Sean Davis
21k
0
votes
0
replies
1.4k
views
Answer:
A: How do I know which peak to analyze?
6.4 years ago
Sean Davis
21k
1
vote
1
reply
638
views
Answer:
A: Normalizing an entire dataset
6.4 years ago
Sean Davis
21k
0
votes
0
replies
850
views
Comment:
C: R version and packages problems
6.4 years ago
Sean Davis
21k
0
votes
0
replies
2.0k
views
Answer:
C: Cannot retrieve projects from TCGA using getGDCprojects function
6.5 years ago
Sean Davis
21k
0
votes
1
reply
1.2k
views
Comment:
C: Unable to load sqlite file generated by Cuffdiff
6.5 years ago
Sean Davis
21k
0
votes
1
reply
1.8k
views
Comment:
C: Using limma analyze raw data of illumina beadchip
6.5 years ago
Sean Davis
21k
0
votes
0
replies
769
views
Comment:
C: for loop not working!
6.5 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
Comment:
C: DESeq2 biais when genes are missing from the annotation?
6.5 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
Comment:
C: DESeq2 biais when genes are missing from the annotation?
6.5 years ago
Sean Davis
21k
0
votes
0
replies
1.3k
views
Answer:
A: how to obtain differentially expressed genes from a GSE serie
6.5 years ago
Sean Davis
21k
3
votes
1
reply
2.0k
views
Answer:
A: Cannot download GEOmetadb sqlite file
6.5 years ago
Sean Davis
21k
1
vote
0
replies
1.5k
views
Comment:
C: How to construct an up-to-date and annotation-rich RangeSummarizedExperiment obj
6.5 years ago
Sean Davis
21k
1
vote
1
reply
1.5k
views
Answer:
A: How to construct an up-to-date and annotation-rich RangeSummarizedExperiment obj
6.5 years ago
Sean Davis
21k
1
vote
0
replies
3.0k
views
Comment:
C: Comparing one condition to multiple others using DESeq2 contrasts
6.5 years ago
Sean Davis
21k
2
votes
1
reply
3.0k
views
Answer:
A: Comparing one condition to multiple others using DESeq2 contrasts
6.5 years ago
Sean Davis
21k
0
votes
0
replies
962
views
Answer:
A: Subsetting samples and columns of a MethyLumiSet subsets QC probes
6.5 years ago
Sean Davis
21k
0
votes
0
replies
2.0k
views
Comment:
C: problem with getSRAfile in SRAdb
6.5 years ago
Sean Davis
21k
1
vote
0
replies
1.3k
views
Answer:
A: Changing R package dependencies
6.5 years ago
Sean Davis
21k
0
votes
1
reply
1.9k
views
Comment:
C: DOI for packages
6.5 years ago
Sean Davis
21k
0
votes
0
replies
868
views
Comment:
C: Trouble with multtest
6.6 years ago
Sean Davis
21k
10
votes
6
replies
4.7k
views
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq
deseq2
edger
voom
limma
updated 6.6 years ago by
Paul Harrison
▴ 100 • written 8.9 years ago by
Sean Davis
21k
14
votes
8
replies
2.6k
views
News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
0
votes
0
replies
1.4k
views
Comment:
C: GEOquery download error
6.7 years ago
Sean Davis
21k
1
vote
0
replies
2.6k
views
Comment:
C: Bioconductor packages now each have a DOI.
6.7 years ago
Sean Davis
21k
0
votes
1
reply
1.8k
views
Comment:
C: Unused argument of reader = read_tsv on R version 3.4.1
6.7 years ago
Sean Davis
21k
1
vote
0
replies
2.6k
views
Comment:
C: Bioconductor packages now each have a DOI.
6.7 years ago
Sean Davis
21k
1
vote
1
reply
4.0k
views
Answer:
A: Retrieving data from NCBI GEO Problem and RNA-Seq Data Analysis
6.7 years ago
Sean Davis
21k
1
vote
1
reply
1.6k
views
Answer:
A: Problem with GEOquery R package in Windows when trying to download specific GEO
7.1 years ago
Sean Davis
21k
5
votes
3
replies
1.6k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 7.1 years ago by
Marcel Ramos
690 • written 7.7 years ago by
Sean Davis
21k
0
votes
0
replies
2.9k
views
Comment:
C: getGEO function not identifying local file
7.1 years ago
Sean Davis
21k
0
votes
3
replies
1.9k
views
GFF3 format from ucsc
updated 7.2 years ago by
maximilianh
▴ 10 • written 18.8 years ago by
Sean Davis
21k
0
votes
0
replies
1.1k
views
Answer:
A: Error in "getGSEDataTables" in GSEquery package
7.4 years ago
Sean Davis
21k
0
votes
0
replies
1.2k
views
Comment:
C: CollapsedVCF and ExpandedVCF rownames and vcfs with large ref/alt columns
7.4 years ago
Sean Davis
21k
3
votes
3
replies
1.2k
views
CollapsedVCF and ExpandedVCF rownames and vcfs with large ref/alt columns
variantannotation
VCF
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
Sean Davis
21k
0
votes
2
replies
1.4k
views
Problem with VariantAnnotation and VCF "R" genotype fields when expanding CollapsedVCF
VariantAnnotation
bug
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
Sean Davis
21k
0
votes
0
replies
1.2k
views
Comment:
C: Reading files from Softlayer Object Storage
7.4 years ago
Sean Davis
21k
1
vote
0
replies
1.2k
views
Answer:
A: Reading files from Softlayer Object Storage
7.4 years ago
Sean Davis
21k
0
votes
1
reply
1.3k
views
Comment:
C: How to start CrispRVariants with fastq file starting point
7.4 years ago
Sean Davis
21k
0
votes
1
reply
2.1k
views
Answer:
A: GEOquery error in downloading SOFT files
7.5 years ago
Sean Davis
21k
0
votes
1
reply
3.8k
views
Comment:
C: GEOquery Fails to Download Series Matrix File
7.5 years ago
Sean Davis
21k
3
votes
0
replies
3.8k
views
Answer:
A: GEOquery Fails to Download Series Matrix File
7.5 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
Answer:
A: SRAdb "outdated" sqlite db
7.6 years ago
Sean Davis
21k
3
votes
1
reply
1.2k
views
News:
Bioconductor Mendeley Group
bioconductor
publication
News
updated 7.6 years ago by
taniaak062
• 0 • written 7.7 years ago by
Sean Davis
21k
0
votes
0
replies
2.2k
views
Answer:
A: GEO error : Warning message: In read.table(file = file, header = header, sep = s
7.7 years ago
Sean Davis
21k
2,186 results • Page
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