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cgh
•
reset
1
vote
2
replies
1.8k
views
Columns used by read.maimages for Agilent arrays
Annotation
CGH
limma
9.9 years ago • updated 4.7 years ago
Gordon Smyth
45k
2
votes
3
replies
828
views
read.maimages
Annotation
CGH
limma
Annotation
CGH
limma
updated 4.7 years ago by
Gordon Smyth
45k • written 9.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
483
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
5.1 years ago
kitcurtius
• 0
5
votes
3
replies
1.0k
views
Classes and methods for working with segmented copy number data
cgh
copynumber
updated 5.2 years ago by
Marcel Ramos
570 • written 5.9 years ago by
Sean Davis
21k
0
votes
0
replies
612
views
problem in doing aCGH+SNP analysis
cgh
7.2 years ago
kajayh
• 0
0
votes
1
reply
1.2k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray
Annotation
CGH
snapCGH
Microarray
Annotation
CGH
snapCGH
updated 7.9 years ago by
Sean Davis
21k • written 7.9 years ago by
Guest User
★ 12k
0
votes
0
replies
583
views
analyses of CGH data
Microarray
CGH
Microarray
CGH
8.7 years ago
Isha Pandey Phd Scholar BITS Pilani Cam…
▴ 10
0
votes
0
replies
1.0k
views
Chr Info for array CGH - agilent 60K
CGH
CGH
8.8 years ago
Cian Murphy
▴ 40
0
votes
0
replies
605
views
snapCGH and clonesinfo
CGH
limma
snapCGH
CGH
limma
snapCGH
9.0 years ago
Juliet Hannah
▴ 360
0
votes
1
reply
889
views
CNTools error message
CGH
probe
DNAcopy
CGH
probe
DNAcopy
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
nac
▴ 280
0
votes
1
reply
1.1k
views
CGHweb and cghFLasso
CGH
CGH
updated 10.8 years ago by
Vincent J. Carey, Jr.
6.6k • written 10.8 years ago by
Chris Fenton
▴ 80
0
votes
3
replies
2.0k
views
Script to save plots in Pdf format ( DNAcopy)
CGH
PROcess
CGH
PROcess
updated 11.2 years ago by
Thomas Hampton
▴ 750 • written 11.2 years ago by
nac
▴ 280
0
votes
0
replies
1.3k
views
seeking advice on analyzing CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
11.6 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
607
views
how to import Agilent CGH custom design xml file into limma
Normalization
CGH
probe
limma
Normalization
CGH
probe
limma
11.7 years ago
Sean Davis
21k
0
votes
1
reply
1.3k
views
how to import Agilent CGH custom design xml file into limma
aCGH
CGH
probe
aCGH
snapCGH
aCGH
CGH
probe
aCGH
snapCGH
updated 11.7 years ago by
Sean Davis
21k • written 11.7 years ago by
Jarek Bryk
▴ 110
0
votes
2
replies
875
views
memory limit
CGH
trigger
CGH
trigger
updated 11.7 years ago by
Steve Lianoglou
13k • written 11.7 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
968
views
aCGH...'Genomic events'
CGH
CGH
updated 11.8 years ago by
Sean Davis
21k • written 11.8 years ago by
BTIS Department
▴ 10
0
votes
1
reply
987
views
limma Agilent Normalization
Normalization
CGH
Normalization
CGH
updated 12.0 years ago by
Sean Davis
21k • written 12.0 years ago by
Noemi Andor
▴ 100
0
votes
0
replies
607
views
CGHcall problem
CGH
CGHcall
CGH
CGHcall
12.2 years ago
Erik Dassi
▴ 10
0
votes
2
replies
908
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 12.2 years ago by
Joern Toedling
▴ 450 • written 12.2 years ago by
Chris Fenton
▴ 80
0
votes
7
replies
931
views
CGH analysis without genome positions
CGH
CGH
updated 12.2 years ago by
Sean Davis
21k • written 12.2 years ago by
adam_pgsql
▴ 70
0
votes
1
reply
1.1k
views
CNV analysis with cghMCR/CNTools
GO
CGH
hgu133a
hgu95av2
GO
CGH
hgu133a
hgu95av2
updated 12.4 years ago by
John Zhang
★ 2.9k • written 12.4 years ago by
Tim Smith
★ 1.1k
0
votes
2
replies
868
views
Calling genes present or absent in CGH data
CGH
limma
CGH
limma
updated 12.4 years ago by
Sean Davis
21k • written 12.4 years ago by
adam_pgsql
▴ 70
0
votes
0
replies
896
views
Bioconductor 2.5 is released
Sequencing
miRNA
Microarray
qPCR
Annotation
Network
Bayesian
Regression
CGH
stam
Rintact
12.7 years ago
Patrick Aboyoun
1.6k
0
votes
0
replies
753
views
problems with snapCGH readPositionalInfo processCGH
CGH
snapCGH
CGH
snapCGH
12.8 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
638
views
rtracklayer browserView
CGH
rtracklayer
CGH
rtracklayer
12.8 years ago
Giulio Di Giovanni
▴ 540
0
votes
0
replies
752
views
general CGH threshold question
aCGH
CGH
aCGH
GLAD
snapCGH
aCGH
CGH
aCGH
GLAD
snapCGH
12.9 years ago
Wolfgang RAFFELSBERGER
▴ 140
0
votes
1
reply
621
views
NimbleGen HG18 CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
updated 12.9 years ago by
Sean Davis
21k • written 12.9 years ago by
Abcis
▴ 10
0
votes
0
replies
562
views
error in runBioHMM() (package snapCGH)
CGH
snapCGH
CGH
snapCGH
13.2 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
1
reply
572
views
How to run bioHMM on Affymetrix data?
CGH
CGH
updated 13.2 years ago by
Oosting, J. PATH
▴ 550 • written 13.2 years ago by
Stacey Burrows
▴ 30
0
votes
2
replies
693
views
How to display chromosome rapresentation ?
CGH
impute
CGH
impute
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Giulio Di Giovanni
▴ 540
0
votes
1
reply
758
views
Where to download annotation package for Agilent human CGH 44B
Annotation
CGH
Annotation
CGH
updated 13.4 years ago by
Marc Carlson
★ 7.2k • written 13.4 years ago by
Daren Tan
▴ 190
0
votes
0
replies
682
views
Annotation package for Agilent human CGH 44B
Annotation
CGH
Homo sapiens
Annotation
CGH
Homo sapiens
13.4 years ago
Daren Tan
▴ 190
0
votes
1
reply
995
views
A CGH platform question
SNP
Genetics
Coverage
CGH
affy
SNP
Genetics
Coverage
CGH
affy
updated 13.5 years ago by
Henrik Bengtsson
★ 2.4k • written 13.5 years ago by
Johan Lindberg
▴ 70
0
votes
1
reply
502
views
CGH analysis in non-model organism
CGH
CGH
updated 13.6 years ago by
Sean Davis
21k • written 13.6 years ago by
Mingkwan Nipitwattanaphon
▴ 30
0
votes
5
replies
713
views
quality assessment and preprocessing for tiling array-based CGH data
CGH
probe
CGH
probe
updated 13.7 years ago by
Sean Davis
21k • written 13.7 years ago by
Leon Yee
▴ 110
0
votes
0
replies
1.4k
views
Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP
Genetics
Pathways
Cancer
CGH
microRNA
SNP
Genetics
Pathways
Cancer
CGH
microRNA
13.7 years ago
Florian Markowetz
▴ 20
0
votes
1
reply
653
views
normexp error (while using snapCGH)
CGH
snapCGH
CGH
snapCGH
updated 13.8 years ago by
Artur Veloso
▴ 340 • written 13.7 years ago by
Abhilash Venu
▴ 340
0
votes
1
reply
816
views
Agilent Human Genome CGH 44K annotation
Annotation
Cancer
CGH
Annotation
Cancer
CGH
updated 13.8 years ago by
Sean Davis
21k • written 13.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
9
replies
954
views
gains and losses via mode shifting
Cancer
CGH
Cancer
CGH
14.0 years ago
Oscar Rueda
▴ 60
0
votes
0
replies
505
views
snapCGH package - processCGH
CGH
CGH
14.0 years ago
Henrique Proença
▴ 80
0
votes
5
replies
705
views
gains and losses via mode shifting
CGH
CGH
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
Benjamin Otto
▴ 830
0
votes
2
replies
704
views
cross species CGH Nimblegene arrays
CGH
CGH
updated 14.1 years ago by
Alicia Oshlack
▴ 70 • written 14.1 years ago by
mb23
▴ 30
0
votes
0
replies
555
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
14.1 years ago
mb23
▴ 30
0
votes
2
replies
505
views
Fwd: Re: cross species CGH Nimblegene arrays
CGH
CGH
updated 14.1 years ago by
Sean Davis
21k • written 14.1 years ago by
mb23
▴ 30
0
votes
0
replies
620
views
New Bioconductor package: rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
14.2 years ago
Michael Lawrence
▴ 620
0
votes
2
replies
567
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
updated 14.2 years ago by
Abhilash Venu
▴ 340 • written 14.2 years ago by
Sean Davis
21k
0
votes
0
replies
434
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH
CGH
14.2 years ago
Sean Davis
21k
0
votes
1
reply
694
views
array CGH - raw data analysis
CGH
CGH
updated 14.3 years ago by
Sean Davis
21k • written 14.3 years ago by
João Fadista
▴ 500
0
votes
0
replies
939
views
JOB: Microarray Bioinformatics Specialist
Microarray
Cancer
CGH
cycle
Microarray
Cancer
CGH
cycle
14.3 years ago
Robert Castelo
★ 2.9k
50 results • Page
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Recent ...
Replies
Comment: Scaling for p.heatmap
by
Bhavana
• 0
Okay, I understand...Thank you for the clarification! And thanks for pointing out that I need to update my versions :)
Comment: How to combine VCF-class and data.frame with annotations
by
didanax972
• 0
If you have more than one VCF file and want to merge all VCF files then you create one VCF file without any data loss by using VCF Merge & …
Comment: VariantAnnotation R Package - Merging Two VCF files
by
didanax972
• 0
In case you like to merge the numerous VCF files into a single file then you should opt for the VCF Merger tool. This tool is a dedicated a…
Comment: merging VCF files
by
didanax972
• 0
Use Merge VCF a quick and instant solution to combine multiple VCF files into a new VCF file. The tool effortlessly merges multiple VCF fil…
Comment: Error: DESeq(dds , useT = TRUE, minmu = 1e-06, test = "LRT", : likelih
by
ATpoint
★ 1.3k
Would you mind reading the vignette towards how the LRT works: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2…
Votes
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
Answer: Using Age or other numerical variable to model expression in deseq2
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