Showing : cgh • reset
1
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Columns used by read.maimages for Agilent arrays
Annotation CGH limma
8.9 years ago • updated 3.7 years ago Gordon Smyth 43k
2
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3
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735
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read.maimages
Annotation CGH limma Annotation CGH limma
updated 3.7 years ago by 43k • written 8.9 years ago by ★ 1.5k
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How to combine CGHcall objects
cghcall r cgh copy number
4.1 years ago kitcurtius • 0
5
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3
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853
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 4.2 years ago by 540 • written 4.9 years ago by 21k
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546
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problem in doing aCGH+SNP analysis
cgh
6.2 years ago kajayh • 0
0
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1
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1.1k
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Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray Annotation CGH snapCGH Microarray Annotation CGH snapCGH
updated 6.9 years ago by 21k • written 6.9 years ago by ★ 12k
0
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analyses of CGH data
Microarray CGH Microarray CGH
7.7 years ago Isha Pandey Phd Scholar BITS Pilani Cam… ▴ 10
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971
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Chr Info for array CGH - agilent 60K
CGH CGH
7.8 years ago Cian Murphy ▴ 40
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524
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snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
8.0 years ago Juliet Hannah ▴ 360
0
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1
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733
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 9.4 years ago by 25k • written 9.4 years ago by ▴ 280
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1
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915
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CGHweb and cghFLasso
CGH CGH
updated 9.8 years ago by 6.5k • written 9.8 years ago by ▴ 80
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3
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1.7k
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Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 10.2 years ago by ▴ 750 • written 10.2 years ago by ▴ 280
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1.2k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
10.6 years ago Paul Shannon ★ 1.1k
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542
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how to import Agilent CGH custom design xml file into limma
Normalization CGH probe limma Normalization CGH probe limma
10.7 years ago Sean Davis 21k
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1
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1.1k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 10.7 years ago by 21k • written 10.7 years ago by ▴ 110
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2
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718
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memory limit
CGH trigger CGH trigger
updated 10.7 years ago by 13k • written 10.7 years ago by ▴ 100
0
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1
reply
705
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aCGH...'Genomic events'
CGH CGH
updated 10.8 years ago by 21k • written 10.8 years ago by ▴ 10
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1
reply
910
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limma Agilent Normalization
Normalization CGH Normalization CGH
updated 11.0 years ago by 21k • written 11.0 years ago by ▴ 100
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524
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CGHcall problem
CGH CGHcall CGH CGHcall
11.2 years ago Erik Dassi ▴ 10
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2
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778
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Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 11.2 years ago by ▴ 450 • written 11.2 years ago by ▴ 80
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7
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778
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CGH analysis without genome positions
CGH CGH
updated 11.2 years ago by 21k • written 11.2 years ago by ▴ 70
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1
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899
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CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 11.4 years ago by ★ 2.9k • written 11.4 years ago by ★ 1.1k
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Calling genes present or absent in CGH data
CGH limma CGH limma
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 70
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813
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
11.7 years ago Patrick Aboyoun 1.6k
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657
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problems with snapCGH readPositionalInfo processCGH
CGH snapCGH CGH snapCGH
11.8 years ago Dick Beyer ★ 1.4k
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1
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562
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rtracklayer browserView
CGH rtracklayer CGH rtracklayer
11.8 years ago Giulio Di Giovanni ▴ 540
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613
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
11.8 years ago Wolfgang RAFFELSBERGER ▴ 140
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1
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564
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NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 11.9 years ago by 21k • written 11.9 years ago by ▴ 10
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503
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error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
12.1 years ago Wolfgang Raffelsberger ▴ 160
0
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1
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481
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How to run bioHMM on Affymetrix data?
CGH CGH
updated 12.2 years ago by ▴ 550 • written 12.2 years ago by ▴ 30
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2
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How to display chromosome rapresentation ?
CGH impute CGH impute
updated 12.3 years ago by 21k • written 12.3 years ago by ▴ 540
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1
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690
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Where to download annotation package for Agilent human CGH 44B
Annotation CGH Annotation CGH
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 180
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
12.4 years ago Daren Tan ▴ 180
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1
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892
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A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 12.5 years ago by ★ 2.4k • written 12.5 years ago by ▴ 70
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1
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416
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CGH analysis in non-model organism
CGH CGH
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 30
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5
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639
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quality assessment and preprocessing for tiling array-based CGH data
CGH probe CGH probe
updated 12.7 years ago by 21k • written 12.7 years ago by ▴ 110
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0
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
12.7 years ago Florian Markowetz ▴ 20
0
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1
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556
views
normexp error (while using snapCGH)
CGH snapCGH CGH snapCGH
updated 12.7 years ago by ▴ 340 • written 12.7 years ago by ▴ 340
0
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1
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748
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Agilent Human Genome CGH 44K annotation
Annotation Cancer CGH Annotation Cancer CGH
updated 12.8 years ago by 21k • written 12.8 years ago by ★ 1.9k
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9
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690
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gains and losses via mode shifting
Cancer CGH Cancer CGH
13.0 years ago Oscar Rueda ▴ 60
0
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454
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snapCGH package - processCGH
CGH CGH
13.0 years ago Henrique Proença ▴ 80
0
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5
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585
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gains and losses via mode shifting
CGH CGH
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 830
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2
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607
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cross species CGH Nimblegene arrays
CGH CGH
updated 13.1 years ago by ▴ 70 • written 13.1 years ago by ▴ 30
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0
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497
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
13.1 years ago mb23 ▴ 30
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2
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430
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Fwd: Re: cross species CGH Nimblegene arrays
CGH CGH
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 30
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0
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545
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New Bioconductor package: rtracklayer
Sequencing Annotation CGH GenomeGraphs rtracklayer Sequencing Annotation CGH GenomeGraphs
13.1 years ago Michael Lawrence ▴ 620
0
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2
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489
views
Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
updated 13.2 years ago by ▴ 340 • written 13.2 years ago by 21k
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Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]
CGH CGH
13.2 years ago Sean Davis 21k
0
votes
1
reply
611
views
array CGH - raw data analysis
CGH CGH
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 500
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0
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783
views
JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
13.3 years ago Robert Castelo ★ 2.7k
50 results • Page 1 of 1
Recent ...
Replies
Comment: GoSemSim by han • 0
Thank you so much for your assistance!
Answer: GoSemSim by Guido Hooiveld ★ 3.0k
You likely made a typo: the name of the library is G**O**SemSim (and not G**o**SemSim)! > library(GOSemSim) > d <- godata('org…
Comment: dispersion increasing for extreme high mean counts by P1000 • 0
Thanks very much for sharing your thoughts
Answer: dispersion increasing for extreme high mean counts by Michael Love 33k
*"we expect a high degree of variance for highly-expressed genes (a given gene may be highly expressed in one condition but not another)"* …
Answer: Complex design with paired and unpaired samples with edgeR RNA-seq DE analysis by Gordon Smyth 43k
In edgeR, you would need to do two separate analyses, a paired analysis of A vs B and an unpaired analysis of A vs C. That might be the bes…
Votes
Answer: GoSemSim
Answer: GoSemSim
Answer: GoSemSim
Answer: Complex design with paired and unpaired samples with edgeR RNA-seq DE analysis
Answer: Complex design with paired and unpaired samples with edgeR RNA-seq DE analysis
Awards • All
Teacher to Guido Hooiveld ★ 3.0k
Scholar to Gordon Smyth 43k
Scholar to Michael Love 33k
Scholar to Robert Castelo ★ 2.7k
Scholar to James W. MacDonald 57k
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