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Comment:
C: Normalizing RNA-Seq data without replicates.
7.9 years ago
Sean Davis
21k
2
votes
0
replies
2.0k
views
Answer:
A: GEOquery::getGEO warning: not all columns named in 'colClasses' exist
8.0 years ago
Sean Davis
21k
0
votes
0
replies
1.1k
views
Job:
Staff Scientist, Laboratory of Genome Integrity, NCI, NIH
job
Job
8.2 years ago
Sean Davis
21k
2
votes
0
replies
1.3k
views
Answer:
A: Limma -decideTests interpretation for M-values
8.2 years ago
Sean Davis
21k
1
vote
1
reply
9.3k
views
Comment:
C: GEOquery: getGEO() doesn\'t work (error \"invalid \'nlines\' argument\")
8.3 years ago
Sean Davis
21k
0
votes
0
replies
1.4k
views
Comment:
C: Rsamtools PileupParam set minimum depth to zero
8.3 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
Comment:
C: Rsamtools PileupParam set minimum depth to zero
8.3 years ago
Sean Davis
21k
0
votes
0
replies
7.4k
views
Comment:
C: How do I split GRange object (set of genomic ranges with 2 metadata column) by c
8.3 years ago
Sean Davis
21k
0
votes
1
reply
2.2k
views
Comment:
C: Regarding somatic signature package
8.3 years ago
Sean Davis
21k
1
vote
1
reply
2.2k
views
Comment:
C: Regarding somatic signature package
8.3 years ago
Sean Davis
21k
3
votes
1
reply
1.6k
views
Answer:
A: very high adjusted P-vals using Illumina data from GEO
8.3 years ago
Sean Davis
21k
2
votes
0
replies
2.2k
views
Answer:
A: Regarding somatic signature package
8.3 years ago
Sean Davis
21k
0
votes
0
replies
4.2k
views
Comment:
C: looping through a GRangesList object
8.3 years ago
Sean Davis
21k
1
vote
0
replies
1.6k
views
Answer:
A: GEOquery: Shifted data columns in phenotype data
8.3 years ago
Sean Davis
21k
0
votes
1
reply
3.8k
views
Comment:
C: wilcoxon signed rank test for data frame
8.3 years ago
Sean Davis
21k
0
votes
0
replies
724
views
Answer:
A: Problem with GDS2eSet(). How can I edit GDS column name so it matches GPL?
8.6 years ago
Sean Davis
21k
1
vote
0
replies
7.0k
views
Comment:
C: getGEO - cannot Open URL issue
8.6 years ago
Sean Davis
21k
0
votes
1
reply
7.0k
views
Comment:
C: getGEO - cannot Open URL issue
8.6 years ago
Sean Davis
21k
1
vote
1
reply
2.5k
views
Answer:
A: How to find significantly stably expressed miRNA with DESeq2 DE results
8.6 years ago
Sean Davis
21k
0
votes
1
reply
1.8k
views
Answer:
A: Reading IDAT files from Illumina HumanMethylation450 BeadChip with beadarray
8.6 years ago
Sean Davis
21k
0
votes
0
replies
2.4k
views
Comment:
C: Display subset of rownames in large heatmap?
8.7 years ago
Sean Davis
21k
0
votes
1
reply
2.9k
views
Answer:
A: getGEO function not identifying local file
8.7 years ago
Sean Davis
21k
1
vote
1
reply
3.1k
views
Comment:
C: How to use expression set object to select genes using different gene selection
8.7 years ago
Sean Davis
21k
0
votes
0
replies
3.2k
views
Comment:
C: GEOquery: Error Message
8.7 years ago
Sean Davis
21k
4
votes
3
replies
4.7k
views
Answer:
A: GEOquery: 0 features in the gset object
8.8 years ago
Sean Davis
21k
0
votes
0
replies
1.1k
views
Comment:
C: Problems with autosomalRecessiveHomozygous
8.8 years ago
Sean Davis
21k
0
votes
0
replies
1.7k
views
Comment:
C: Bioc2015 conference ongoing now.
8.8 years ago
Sean Davis
21k
5
votes
1
reply
1.7k
views
News:
Bioc2015 conference ongoing now.
bioconductor
conference
News
8.8 years ago
Sean Davis
21k
0
votes
0
replies
1.2k
views
Comment:
C: expression pattern tracking of some defined gene in a microarray by heatmap
8.8 years ago
Sean Davis
21k
2
votes
1
reply
15k
views
Answer:
A: How to load GEO series matrix file in R Bioconductor
8.8 years ago
Sean Davis
21k
0
votes
0
replies
15k
views
Comment:
C: How to load GEO series matrix file in R Bioconductor
8.8 years ago
Sean Davis
21k
1
vote
0
replies
8.9k
views
Comment:
C: install RCurl in R
8.8 years ago
Sean Davis
21k
0
votes
0
replies
1.5k
views
Comment:
C: mutually add a tab in the beggining of the header to make it a valid RMA format
8.9 years ago
Sean Davis
21k
0
votes
1
reply
1.5k
views
Comment:
C: mutually add a tab in the beggining of the header to make it a valid RMA format
8.9 years ago
Sean Davis
21k
1
vote
0
replies
1.5k
views
Comment:
C: mutually add a tab in the beggining of the header to make it a valid RMA format
8.9 years ago
Sean Davis
21k
0
votes
0
replies
1.1k
views
News:
New Bioconductor channel on F1000Research
bioconductor
news
News
8.9 years ago
Sean Davis
21k
0
votes
1
reply
4.3k
views
Comment:
C: Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.
8.9 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
Comment:
C: Diffrential expression analysis of human vs. mouse
8.9 years ago
Sean Davis
21k
0
votes
0
replies
3.2k
views
Comment:
C: GEOquery: Error Message
8.9 years ago
Sean Davis
21k
0
votes
1
reply
4.3k
views
Answer:
A: Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.
8.9 years ago
Sean Davis
21k
6
votes
1
reply
3.9k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.9 years ago
Sean Davis
21k
1
vote
0
replies
1.5k
views
Answer:
A: Importing Bowtie result into R
8.9 years ago
Sean Davis
21k
0
votes
1
reply
1.5k
views
Comment:
C: Importing Bowtie result into R
8.9 years ago
Sean Davis
21k
0
votes
1
reply
4.7k
views
Comment:
C: Bootstrap confidence intervals on RNA-seq expression from Kallisto
8.9 years ago
Sean Davis
21k
0
votes
1
reply
2.0k
views
Comment:
C: R plot error
9.0 years ago
Sean Davis
21k
3
votes
0
replies
3.8k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
9.0 years ago
Sean Davis
21k
0
votes
0
replies
2.6k
views
Comment:
C: How to convert bia file to tsv file
9.0 years ago
Sean Davis
21k
1
vote
0
replies
2.6k
views
Comment:
C: How to convert bia file to tsv file
9.0 years ago
Sean Davis
21k
0
votes
0
replies
2.1k
views
Comment:
C: Bioconductor Docker Development container
9.0 years ago
Sean Davis
21k
0
votes
0
replies
3.0k
views
Comment:
C: shortread with large fastq files
9.0 years ago
Sean Davis
21k
2,186 results • Page
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