Biostar Sra

Showing : sra • reset

votes

127

views

SRA DESeq2

7 weeks ago Serge • 0

votes

replies

328

views

RNA-seq SRA reverse reads forward reads

3.1 years ago modarzi ▴ 10

votes

617

views

R fastq SRA sradb

updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by grecoandreauni • 0

votes

replies

1.3k

views

sra chipseqDB fastq-dump .lite.sra

updated 4.8 years ago by James W. MacDonald 57k • written 4.8 years ago by xhe764 • 0

votes

replies

818

views

ncbi sra search

5.5 years ago massacomgrao • 0

votes

2.7k

views

rnaseq biocparallel workflows sra Tutorial

6.1 years ago Sean Davis 21k

6 results • Page 1 of 1

Recent ...

Replies

Comment: Accession ID Conversion and Missing Results by James W. MacDonald 57k

If there were a simple way around this I would have told you rather than explain why it doesn't do what you expect. I mean, what's the prof…

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k

I would set reference levels for all factors in the design.

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Hi, Michael: Really appreciated your input and advice! For the first question, I did used "WT" for my second way of modle setting althoug…

Comment: Error in .testForValidKeys "org.At.tair.db" by James W. MacDonald 57k

I must have hit Enter too soon, so you should come to the support site to see my full answer.

Comment: cannot install edgeR on M1 Mac by flalom • 0

I had the same problem, I followed your answer but with one variation: I did not make the symbolic links, instead I changed the FC in the M…

Votes

C: DESeq2 design formula: single control for multiple conditions [RIP-seq]

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Answer: cannot install edgeR on M1 Mac

Answer: problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignmen

Awards • All

Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k