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0
votes
0
replies
770
views
build a chromLocation object for SNP locations, not genes
SNP
hu6800
SNP
hu6800
16.3 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
850
views
IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
updated 16.4 years ago by
Michael Lawrence
▴ 620 • written 16.4 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
852
views
IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
IRanges
IRanges
16.4 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
1.4k
views
query BiomaRt for the coordinates of the coding regions within individual exons?
biomaRt
biomaRt
16.5 years ago
Paul Shannon
★ 1.1k
0
votes
4
replies
1.9k
views
KEGGGraph: some complexed proteins are orphans in graphNEL
KEGGgraph
KEGGgraph
updated 16.5 years ago by
Jitao David Zhang
▴ 340 • written 16.5 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.9k
views
Comment:
C: KEGGGraph: some complexed proteins are orphans in graphNEL
16.5 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
1.4k
views
Comment:
C: Rredland installation difficulties
16.5 years ago
Paul Shannon
★ 1.1k
0
votes
4
replies
1.4k
views
Rredland installation difficulties
Pathways
graph
Rredland
Pathways
graph
Rredland
updated 16.5 years ago by
Patrick Aboyoun
★ 1.6k • written 16.5 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
931
views
assemble DNAString complete coding sequence from exons?
updated 16.6 years ago by
Hervé Pagès
16k • written 16.6 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
773
views
duplicate entries in org.Hs.egCHRLOC?
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.4k
views
Comment:
C: other human genomes, other SNP sets?
16.6 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
1.4k
views
Answer:
A: other human genomes, other SNP sets?
16.6 years ago
Paul Shannon
★ 1.1k
0
votes
3
replies
1.4k
views
other human genomes, other SNP sets?
Sequencing
BSgenome
SNPlocs
BSgenome
Sequencing
BSgenome
SNPlocs
BSgenome
16.7 years ago • updated 16.6 years ago
Paul Shannon
★ 1.1k
0
votes
4
replies
3.1k
views
how to modify a Biostrings object
SNPlocs
SNPlocs
updated 16.7 years ago by
Hervé Pagès
16k • written 16.7 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
831
views
rtracklayer/argo error: Error in .jcall("calhoun/gebo/ui/DesktopFrame"
16.7 years ago
Paul Shannon
★ 1.1k
0
votes
2
replies
1.0k
views
BSgenome, GenomeSearching.: "Injecting known SNPs in the chromosome sequences"
updated 16.7 years ago by
Hervé Pagès
16k • written 16.7 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.2k
views
rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2
rtracklayer
hgu133plus2
rtracklayer
16.7 years ago
Paul Shannon
★ 1.1k
0
votes
2
replies
894
views
comparing multiple individual genomes in bioc?
genomes
genomes
updated 16.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.8 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.9k
views
rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2
rtracklayer
hgu133plus2
rtracklayer
16.8 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
2.2k
views
molecular viz tools (eg, PyMol) and R?
chimera
chimera
updated 17.3 years ago by
Thomas Girke
★ 1.7k • written 17.3 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.1k
views
updateGraph & deprecated edgemode slot
graph
graph
updated 17.3 years ago by
Tony Chiang
▴ 570 • written 17.3 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
877
views
GraphAT help?
Yeast
GraphAT
Yeast
GraphAT
updated 17.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 17.4 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
2.4k
views
Comment:
C: "GOHyperGResult" is not a defined class
17.7 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
1.3k
views
Comment:
C: dumb question: using Biostrings (or something else) to translate DNA bases to am
17.8 years ago
Paul Shannon
★ 1.1k
0
votes
3
replies
1.3k
views
dumb question: using Biostrings (or something else) to translate DNA bases to amino acid codes
Biostrings
Biostrings
updated 17.8 years ago by
Lynn Amon
▴ 280 • written 17.8 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
2.1k
views
Comment:
C: how to build a GOstats-compatible annotation package for plasmodium falciparum?
18.0 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
2.1k
views
Comment:
C: how to build a GOstats-compatible annotation package for plasmodium falciparum?
18.0 years ago
Paul Shannon
★ 1.1k
0
votes
10
replies
2.1k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation
Yeast
GOstats
Annotation
Yeast
GOstats
updated 18.0 years ago by
Dave Berger
▴ 30 • written 18.0 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
2.1k
views
Comment:
C: how to build a GOstats-compatible annotation package for plasmodium falciparum?
18.0 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
2.0k
views
Comment:
C: KEGG & hyperGTest: an example?
18.0 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
2.0k
views
Comment:
C: KEGG & hyperGTest: an example?
18.0 years ago
Paul Shannon
★ 1.1k
0
votes
5
replies
2.0k
views
KEGG & hyperGTest: an example?
Annotation
Yeast
Organism
Annotation
Yeast
Organism
updated 18.0 years ago by
Seth Falcon
▴ 150 • written 18.0 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
1.9k
views
sequence search using a position weight matrix?
Biostrings
cosmo
Biostrings
cosmo
updated 18.1 years ago by
Hervé Pagès
16k • written 18.1 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
808
views
DNAString ("GC") -- error in nchar? [resolved]
Biostrings
Biostrings
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
12
replies
2.1k
views
DNAString ("GC") -- error in nchar?
Biostrings
Biostrings
updated 18.1 years ago by
Martin Morgan
25k • written 18.1 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
2.1k
views
Comment:
C: DNAString ("GC") -- error in nchar?
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
2.1k
views
Comment:
C: DNAString ("GC") -- error in nchar?
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
2.1k
views
Comment:
C: DNAString ("GC") -- error in nchar?
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
1.9k
views
Comment:
C: slow insertions in to graphNEL object (24 hours for 16k nodes)
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
1.4k
views
Answer:
A: slow graph methods
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
1.9k
views
Comment:
C: slow insertions in to graphNEL object (24 hours for 16k nodes)
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
934
views
graph package: how to combine two graphs to create a third?
graph
graph
updated 18.1 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 18.1 years ago by
Paul Shannon
★ 1.1k
0
votes
7
replies
1.9k
views
slow insertions in to graphNEL object (24 hours for 16k nodes)
graph
graph
updated 18.1 years ago by
Seth Falcon
★ 7.4k • written 18.1 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.9k
views
Comment:
C: slow insertions in to graphNEL object (24 hours for 16k nodes)
18.1 years ago
Paul Shannon
★ 1.1k
0
votes
5
replies
1.5k
views
how to store multiple relationships between nodes in graphNEL?
graph
graph
updated 18.3 years ago by
Seth Falcon
★ 7.4k • written 18.3 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.5k
views
Comment:
C: how to store multiple relationships between nodes in graphNEL?
18.3 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
1.5k
views
Comment:
C: how to store multiple relationships between nodes in graphNEL?
18.3 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
722
views
network (interaction) data repositories for bioc?
updated 18.3 years ago by
Wolfgang Huber
★ 13k • written 18.3 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
5.4k
views
Answer:
A: limma eBayes: how to determine goodness of fit?
18.4 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
5.4k
views
Answer:
A: limma eBayes: how to determine goodness of fit?
18.4 years ago
Paul Shannon
★ 1.1k
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