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618
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build a chromLocation object for SNP locations, not genes
SNP hu6800 SNP hu6800
14.9 years ago Paul Shannon ★ 1.1k
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1
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609
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IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
updated 14.9 years ago by ▴ 620 • written 14.9 years ago by ★ 1.1k
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718
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IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
IRanges IRanges
14.9 years ago Paul Shannon ★ 1.1k
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0
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1.1k
views
query BiomaRt for the coordinates of the coding regions within individual exons?
biomaRt biomaRt
15.0 years ago Paul Shannon ★ 1.1k
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4
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1.5k
views
KEGGGraph: some complexed proteins are orphans in graphNEL
KEGGgraph KEGGgraph
updated 15.0 years ago by ▴ 340 • written 15.0 years ago by ★ 1.1k
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1
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1.5k
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Comment: C: KEGGGraph: some complexed proteins are orphans in graphNEL
15.0 years ago Paul Shannon ★ 1.1k
0
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1
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1.1k
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Comment: C: Rredland installation difficulties
15.0 years ago Paul Shannon ★ 1.1k
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4
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1.1k
views
Rredland installation difficulties
Pathways graph Rredland Pathways graph Rredland
updated 15.0 years ago by ★ 1.6k • written 15.0 years ago by ★ 1.1k
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2
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671
views
assemble DNAString complete coding sequence from exons?
updated 15.1 years ago by 16k • written 15.1 years ago by ★ 1.1k
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1
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586
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duplicate entries in org.Hs.egCHRLOC?
updated 15.2 years ago by 21k • written 15.2 years ago by ★ 1.1k
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1.0k
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Comment: C: other human genomes, other SNP sets?
15.2 years ago Paul Shannon ★ 1.1k
0
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3
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1.0k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
15.2 years ago Paul Shannon ★ 1.1k
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1
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1.0k
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Answer: A: other human genomes, other SNP sets?
15.2 years ago Paul Shannon ★ 1.1k
0
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4
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2.5k
views
how to modify a Biostrings object
SNPlocs SNPlocs
updated 15.2 years ago by 16k • written 15.2 years ago by ★ 1.1k
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0
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696
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rtracklayer/argo error: Error in .jcall("calhoun/gebo/ui/DesktopFrame"
15.3 years ago Paul Shannon ★ 1.1k
0
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2
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809
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BSgenome, GenomeSearching.: "Injecting known SNPs in the chromosome sequences"
updated 15.3 years ago by 16k • written 15.3 years ago by ★ 1.1k
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0
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909
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rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
15.3 years ago Paul Shannon ★ 1.1k
0
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2
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640
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comparing multiple individual genomes in bioc?
genomes genomes
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ★ 1.1k
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0
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1.7k
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rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
15.3 years ago Paul Shannon ★ 1.1k
0
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1
reply
1.8k
views
molecular viz tools (eg, PyMol) and R?
chimera chimera
updated 15.8 years ago by ★ 1.7k • written 15.8 years ago by ★ 1.1k
0
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1
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885
views
updateGraph & deprecated edgemode slot
graph graph
updated 15.8 years ago by ▴ 570 • written 15.8 years ago by ★ 1.1k
0
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1
reply
655
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GraphAT help?
Yeast GraphAT Yeast GraphAT
updated 16.0 years ago by 6.7k • written 16.0 years ago by ★ 1.1k
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0
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2.1k
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Comment: C: "GOHyperGResult" is not a defined class
16.2 years ago Paul Shannon ★ 1.1k
0
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0
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973
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Comment: C: dumb question: using Biostrings (or something else) to translate DNA bases to am
16.3 years ago Paul Shannon ★ 1.1k
0
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3
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973
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dumb question: using Biostrings (or something else) to translate DNA bases to amino acid codes
Biostrings Biostrings
updated 16.3 years ago by ▴ 280 • written 16.3 years ago by ★ 1.1k
0
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1
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1.6k
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Comment: C: how to build a GOstats-compatible annotation package for plasmodium falciparum?
16.5 years ago Paul Shannon ★ 1.1k
0
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1
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1.6k
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Comment: C: how to build a GOstats-compatible annotation package for plasmodium falciparum?
16.5 years ago Paul Shannon ★ 1.1k
0
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10
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1.6k
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how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
0
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2
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1.6k
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Comment: C: how to build a GOstats-compatible annotation package for plasmodium falciparum?
16.5 years ago Paul Shannon ★ 1.1k
0
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1
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1.5k
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Comment: C: KEGG & hyperGTest: an example?
16.5 years ago Paul Shannon ★ 1.1k
0
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1
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1.5k
views
Comment: C: KEGG & hyperGTest: an example?
16.5 years ago Paul Shannon ★ 1.1k
0
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5
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1.5k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
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2
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1.5k
views
sequence search using a position weight matrix?
Biostrings cosmo Biostrings cosmo
updated 16.6 years ago by 16k • written 16.6 years ago by ★ 1.1k
0
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0
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605
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DNAString ("GC") -- error in nchar? [resolved]
Biostrings Biostrings
16.6 years ago Paul Shannon ★ 1.1k
0
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12
replies
1.5k
views
DNAString ("GC") -- error in nchar?
Biostrings Biostrings
updated 16.6 years ago by 25k • written 16.6 years ago by ★ 1.1k
0
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1
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1.5k
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Comment: C: DNAString ("GC") -- error in nchar?
16.6 years ago Paul Shannon ★ 1.1k
0
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1
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1.5k
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Comment: C: DNAString ("GC") -- error in nchar?
16.6 years ago Paul Shannon ★ 1.1k
0
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1
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1.5k
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Comment: C: DNAString ("GC") -- error in nchar?
16.6 years ago Paul Shannon ★ 1.1k
0
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1
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1.4k
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Comment: C: slow insertions in to graphNEL object (24 hours for 16k nodes)
16.6 years ago Paul Shannon ★ 1.1k
0
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0
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1.0k
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Answer: A: slow graph methods
16.6 years ago Paul Shannon ★ 1.1k
0
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1
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1.4k
views
Comment: C: slow insertions in to graphNEL object (24 hours for 16k nodes)
16.6 years ago Paul Shannon ★ 1.1k
0
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1
reply
737
views
graph package: how to combine two graphs to create a third?
graph graph
updated 16.6 years ago by ▴ 510 • written 16.6 years ago by ★ 1.1k
0
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7
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1.4k
views
slow insertions in to graphNEL object (24 hours for 16k nodes)
graph graph
updated 16.6 years ago by ★ 7.4k • written 16.7 years ago by ★ 1.1k
0
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0
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1.4k
views
Comment: C: slow insertions in to graphNEL object (24 hours for 16k nodes)
16.7 years ago Paul Shannon ★ 1.1k
0
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5
replies
1.0k
views
how to store multiple relationships between nodes in graphNEL?
graph graph
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ★ 1.1k
0
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0
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1.0k
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Comment: C: how to store multiple relationships between nodes in graphNEL?
16.8 years ago Paul Shannon ★ 1.1k
0
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0
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1.0k
views
Comment: C: how to store multiple relationships between nodes in graphNEL?
16.8 years ago Paul Shannon ★ 1.1k
0
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1
reply
572
views
network (interaction) data repositories for bioc?
updated 16.8 years ago by ★ 13k • written 16.8 years ago by ★ 1.1k
0
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2
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4.5k
views
Answer: A: limma eBayes: how to determine goodness of fit?
16.9 years ago Paul Shannon ★ 1.1k
0
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1
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4.5k
views
Answer: A: limma eBayes: how to determine goodness of fit?
16.9 years ago Paul Shannon ★ 1.1k
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