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SNPlocs.Hsapiens.dbSNP155.GRCh38 0.99.21 missing (e.g.) rs149894845
SNPlocs.Hsapiens.dbSNP155.GRCh38
3.4 years ago Paul Shannon ▴ 470
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Comment: Comment: MotifDb missing some FlyFactor Motifs
3.6 years ago Paul Shannon ▴ 470
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Comment: Comment: MotifDb missing some FlyFactor Motifs
3.7 years ago Paul Shannon ▴ 470
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Answer: Answer: MotifDb missing some FlyFactor Motifs
3.7 years ago Paul Shannon ▴ 470
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3.5k
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Comment: Comment: MotifDb missing some FlyFactor Motifs
3.7 years ago Paul Shannon ▴ 470
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3.5k
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Comment: Comment: MotifDb missing some FlyFactor Motifs
3.7 years ago Paul Shannon ▴ 470
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3.5k
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Comment: Comment: MotifDb missing some FlyFactor Motifs
3.7 years ago Paul Shannon ▴ 470
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1.4k
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slow lookup in SNPlocs.Hsapiens.dbSNP151.GRCh38 (or any SNPlocs package)
SNPlocs.Hsapiens.dbSNP151.GRCh38
updated 2.8 years ago by • 0 • written 4.0 years ago by ▴ 470
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3
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1.5k
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readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
open.BcfFile VariantAnnotation
updated 21 months ago by • 0 • written 4.2 years ago by ▴ 470
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Answer: Answer: readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in dock
4.2 years ago Paul Shannon ▴ 470
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1.5k
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Comment: Comment: support for more genomes [igvR]
4.9 years ago Paul Shannon ▴ 470
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1.5k
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Answer: Answer: support for more genomes [igvR]
4.9 years ago Paul Shannon ▴ 470
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1.5k
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Comment: Comment: support for more genomes [igvR]
5.0 years ago Paul Shannon ▴ 470
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1.5k
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Comment: C: docker image with VariantAnnotation package?
5.3 years ago Paul Shannon ▴ 470
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2
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1.5k
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docker image with VariantAnnotation package?
docker
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 470
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3.5k
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Comment: C: MotifDb missing some FlyFactor Motifs
5.3 years ago Paul Shannon ▴ 470
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1
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3.5k
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Comment: C: MotifDb missing some FlyFactor Motifs
5.3 years ago Paul Shannon ▴ 470
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1
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3.5k
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Comment: C: MotifDb missing some FlyFactor Motifs
5.3 years ago Paul Shannon ▴ 470
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1.0k
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Comment: C: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
5.5 years ago Paul Shannon ▴ 470
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Comment: C: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
5.5 years ago Paul Shannon ▴ 470
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4
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GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
annotation
updated 5.5 years ago by ★ 3.4k • written 5.5 years ago by ▴ 470
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920
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Comment: C: generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw fi
5.8 years ago Paul Shannon ▴ 470
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2
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920
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generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw file?
annotation
updated 5.8 years ago by ★ 3.4k • written 5.8 years ago by ▴ 470
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1
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876
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DeepBlueR - query all annotations across region
ChIP-seq queries
updated 6.8 years ago by 0 • written 6.8 years ago by ▴ 470
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3.5k
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Comment: C: BiocParallel: database disk image is malformed
7.3 years ago Paul Shannon ▴ 470
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1
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3.5k
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Comment: C: BiocParallel: database disk image is malformed
7.3 years ago Paul Shannon ▴ 470
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3.5k
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Comment: C: BiocParallel: database disk image is malformed
7.3 years ago Paul Shannon ▴ 470
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6
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3.5k
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BiocParallel: database disk image is malformed
biocparallel databases
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 470
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0
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840
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use MotifDb package with rGADEM?
matchpwm
7.4 years ago Paul Shannon ▴ 470
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Answer: A: total number of unique transcription factors in MotifDB
8.0 years ago Paul Shannon ▴ 470
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2
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1.7k
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Answer: A: PSICQUIC - Provide own local database of interactions
8.1 years ago Paul Shannon ▴ 470
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1
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2.0k
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Answer: A: How to make a MotifDb object from pwm/pfm files?
8.1 years ago Paul Shannon ▴ 470
3
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1
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2.0k
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Answer: A: Fail to load "MotifDb" package
8.6 years ago Paul Shannon ▴ 470
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1
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1.3k
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3.5 release schedule?
bioconductor
updated 8.6 years ago by ★ 6.8k • written 8.6 years ago by ▴ 470
2
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0
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4.2k
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Answer: A: interactive networks from WGCNA clusters
9.3 years ago Paul Shannon ▴ 470
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2.8k
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Comment: C: WGCNA network visualisation in RCyjs
9.3 years ago Paul Shannon ▴ 470
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2.8k
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Answer: A: WGCNA network visualisation in RCyjs
9.3 years ago Paul Shannon ▴ 470
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2.8k
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Answer: A: WGCNA network visualisation in RCyjs
9.3 years ago Paul Shannon ▴ 470
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1
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1.6k
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Answer: A: taking intersection between 6 networks by graph.intersect
9.4 years ago Paul Shannon ▴ 470
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1
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15k
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Answer: A: Problem with biomart's listMarts function
9.4 years ago Paul Shannon ▴ 470
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2.3k
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Comment: C: filterVcf by sample id
9.6 years ago Paul Shannon ▴ 470
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2.3k
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Comment: C: filterVcf by sample id
9.6 years ago Paul Shannon ▴ 470
4
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4
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2.3k
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filterVcf by sample id
variantannotation
updated 9.6 years ago by ★ 6.8k • written 9.6 years ago by ▴ 470
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1
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3.4k
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Answer: A: Is there an R package providing an R API for IGV / igvtools out there?
9.6 years ago Paul Shannon ▴ 470
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Answer: A: ConnectivityMap Package (instances, rankMatrix data)
11.3 years ago Paul Shannon ▴ 470
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0
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1.6k
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question on MotifDb package
Transcription MotifDb Transcription MotifDb
11.6 years ago Paul Shannon ▴ 470
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1
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2.6k
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Comment: C: RCytoscape: object 'graph' not found error
11.8 years ago Paul Shannon ▴ 470
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2.6k
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Answer: A: RCytoscape: object 'graph' not found error
11.8 years ago Paul Shannon ▴ 470
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1
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2.8k
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Answer: A: Using KeggGraph's KEGGpathway2reactionGraph and mergeKEGGgraphs functions
12.0 years ago Paul Shannon ▴ 470
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2
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5.4k
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Comment: C: Simple pathway enrichment analysis for gene lists
12.1 years ago Paul Shannon ▴ 470
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