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matchpwm
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use MotifDb package with rGADEM?
matchpwm
7.8 years ago
Paul Shannon
▴ 470
0
votes
3
replies
2.0k
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motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
10.3 years ago
vinod.acear
▴ 50
7
votes
6
replies
4.9k
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How to find TF binding sites for particular TF's within +- 1000 bases of gene TSS for all genes in human genome?
bsgenome
transcription factor binding site enrichment analysis
matchpwm
10.7 years ago
duncp92
▴ 20
8
votes
3
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4.0k
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Algorithm description for matchPWM (Biostrings)
biostrings
matchPWM
updated 11.4 years ago by
Hervé Pagès
16k • written 11.4 years ago by
Yue Li
▴ 370
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Comment: Which preprocessing steps are needed before running limpa?
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miro165sabo
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Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
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A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
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