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SNPlocs.Hsapiens.dbSNP155.GRCh38 0.99.21 missing (e.g.) rs149894845
SNPlocs.Hsapiens.dbSNP155.GRCh38
24 months ago Paul Shannon ▴ 470
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Comment: Comment: MotifDb missing some FlyFactor Motifs
2.2 years ago Paul Shannon ▴ 470
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Comment: Comment: MotifDb missing some FlyFactor Motifs
2.2 years ago Paul Shannon ▴ 470
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2.3k
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Answer: Answer: MotifDb missing some FlyFactor Motifs
2.2 years ago Paul Shannon ▴ 470
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2.3k
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Comment: Comment: MotifDb missing some FlyFactor Motifs
2.3 years ago Paul Shannon ▴ 470
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2.3k
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Comment: Comment: MotifDb missing some FlyFactor Motifs
2.3 years ago Paul Shannon ▴ 470
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Comment: Comment: MotifDb missing some FlyFactor Motifs
2.3 years ago Paul Shannon ▴ 470
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893
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slow lookup in SNPlocs.Hsapiens.dbSNP151.GRCh38 (or any SNPlocs package)
SNPlocs.Hsapiens.dbSNP151.GRCh38
updated 16 months ago by • 0 • written 2.6 years ago by ▴ 470
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3
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1.1k
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readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
open.BcfFile VariantAnnotation
updated 3 months ago by • 0 • written 2.8 years ago by ▴ 470
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Answer: Answer: readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in dock
2.8 years ago Paul Shannon ▴ 470
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1.0k
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Comment: Comment: support for more genomes [igvR]
3.5 years ago Paul Shannon ▴ 470
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1
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1.0k
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Answer: Answer: support for more genomes [igvR]
3.5 years ago Paul Shannon ▴ 470
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1.0k
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Comment: Comment: support for more genomes [igvR]
3.5 years ago Paul Shannon ▴ 470
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1.0k
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Comment: C: docker image with VariantAnnotation package?
3.9 years ago Paul Shannon ▴ 470
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2
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1.0k
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docker image with VariantAnnotation package?
docker
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 470
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2.3k
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Comment: C: MotifDb missing some FlyFactor Motifs
3.9 years ago Paul Shannon ▴ 470
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1
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2.3k
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Comment: C: MotifDb missing some FlyFactor Motifs
3.9 years ago Paul Shannon ▴ 470
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1
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2.3k
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Comment: C: MotifDb missing some FlyFactor Motifs
3.9 years ago Paul Shannon ▴ 470
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653
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Comment: C: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
4.1 years ago Paul Shannon ▴ 470
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1
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653
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Comment: C: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
4.1 years ago Paul Shannon ▴ 470
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4
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653
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GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
annotation
updated 4.1 years ago by ★ 3.3k • written 4.1 years ago by ▴ 470
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Comment: C: generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw fi
4.3 years ago Paul Shannon ▴ 470
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2
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608
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generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw file?
annotation
updated 4.3 years ago by ★ 3.3k • written 4.3 years ago by ▴ 470
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1
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601
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DeepBlueR - query all annotations across region
ChIP-seq queries
updated 5.3 years ago by 0 • written 5.3 years ago by ▴ 470
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Comment: C: BiocParallel: database disk image is malformed
5.8 years ago Paul Shannon ▴ 470
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1
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2.9k
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Comment: C: BiocParallel: database disk image is malformed
5.8 years ago Paul Shannon ▴ 470
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1
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2.9k
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Comment: C: BiocParallel: database disk image is malformed
5.8 years ago Paul Shannon ▴ 470
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6
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2.9k
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BiocParallel: database disk image is malformed
biocparallel databases
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 470
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0
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639
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use MotifDb package with rGADEM?
matchpwm
6.0 years ago Paul Shannon ▴ 470
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0
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Answer: A: total number of unique transcription factors in MotifDB
6.5 years ago Paul Shannon ▴ 470
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2
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1.3k
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Answer: A: PSICQUIC - Provide own local database of interactions
6.6 years ago Paul Shannon ▴ 470
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1
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1.5k
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Answer: A: How to make a MotifDb object from pwm/pfm files?
6.7 years ago Paul Shannon ▴ 470
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1
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1.5k
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Answer: A: Fail to load "MotifDb" package
7.1 years ago Paul Shannon ▴ 470
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1
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1.2k
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3.5 release schedule?
bioconductor
updated 7.2 years ago by ★ 6.8k • written 7.2 years ago by ▴ 470
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Answer: A: interactive networks from WGCNA clusters
7.8 years ago Paul Shannon ▴ 470
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Comment: C: WGCNA network visualisation in RCyjs
7.9 years ago Paul Shannon ▴ 470
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Answer: A: WGCNA network visualisation in RCyjs
7.9 years ago Paul Shannon ▴ 470
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2.2k
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Answer: A: WGCNA network visualisation in RCyjs
7.9 years ago Paul Shannon ▴ 470
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1
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1.2k
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Answer: A: taking intersection between 6 networks by graph.intersect
8.0 years ago Paul Shannon ▴ 470
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1
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13k
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Answer: A: Problem with biomart's listMarts function
8.0 years ago Paul Shannon ▴ 470
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1.7k
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Comment: C: filterVcf by sample id
8.2 years ago Paul Shannon ▴ 470
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Comment: C: filterVcf by sample id
8.2 years ago Paul Shannon ▴ 470
4
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4
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1.7k
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filterVcf by sample id
variantannotation
updated 8.2 years ago by ★ 6.8k • written 8.2 years ago by ▴ 470
2
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1
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2.8k
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Answer: A: Is there an R package providing an R API for IGV / igvtools out there?
8.2 years ago Paul Shannon ▴ 470
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917
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Answer: A: ConnectivityMap Package (instances, rankMatrix data)
9.9 years ago Paul Shannon ▴ 470
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0
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1.3k
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question on MotifDb package
Transcription MotifDb Transcription MotifDb
10.2 years ago Paul Shannon ▴ 470
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1
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2.0k
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Comment: C: RCytoscape: object 'graph' not found error
10.3 years ago Paul Shannon ▴ 470
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2.0k
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Answer: A: RCytoscape: object 'graph' not found error
10.3 years ago Paul Shannon ▴ 470
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1
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2.1k
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Answer: A: Using KeggGraph's KEGGpathway2reactionGraph and mergeKEGGgraphs functions
10.6 years ago Paul Shannon ▴ 470
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2
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4.7k
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Comment: C: Simple pathway enrichment analysis for gene lists
10.6 years ago Paul Shannon ▴ 470
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