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questions
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SNPlocs.Hsapiens.dbSNP155.GRCh38 0.99.21 missing (e.g.) rs149894845
SNPlocs.Hsapiens.dbSNP155.GRCh38
24 months ago
Paul Shannon
▴ 470
0
votes
1
reply
893
views
slow lookup in SNPlocs.Hsapiens.dbSNP151.GRCh38 (or any SNPlocs package)
SNPlocs.Hsapiens.dbSNP151.GRCh38
updated 16 months ago by
mbrauer
• 0 • written 2.6 years ago by
Paul Shannon
▴ 470
2
votes
3
replies
1.1k
views
readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
open.BcfFile
VariantAnnotation
updated 3 months ago by
Alex
• 0 • written 2.8 years ago by
Paul Shannon
▴ 470
2
votes
2
replies
1.0k
views
docker image with VariantAnnotation package?
docker
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
Paul Shannon
▴ 470
1
vote
4
replies
651
views
GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
annotation
updated 4.1 years ago by
Robert Castelo
★ 3.3k • written 4.1 years ago by
Paul Shannon
▴ 470
1
vote
2
replies
607
views
generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw file?
annotation
updated 4.3 years ago by
Robert Castelo
★ 3.3k • written 4.3 years ago by
Paul Shannon
▴ 470
0
votes
1
reply
600
views
DeepBlueR - query all annotations across region
ChIP-seq queries
updated 5.3 years ago by
Bioconductor Community
0 • written 5.3 years ago by
Paul Shannon
▴ 470
5
votes
6
replies
2.9k
views
BiocParallel: database disk image is malformed
biocparallel
databases
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Paul Shannon
▴ 470
0
votes
0
replies
639
views
use MotifDb package with rGADEM?
matchpwm
6.0 years ago
Paul Shannon
▴ 470
0
votes
1
reply
1.2k
views
3.5 release schedule?
bioconductor
updated 7.2 years ago by
Valerie Obenchain
★ 6.8k • written 7.2 years ago by
Paul Shannon
▴ 470
4
votes
4
replies
1.7k
views
filterVcf by sample id
variantannotation
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
Paul Shannon
▴ 470
1
vote
0
replies
1.3k
views
question on MotifDb package
Transcription
MotifDb
Transcription
MotifDb
10.1 years ago
Paul Shannon
▴ 470
0
votes
4
replies
1.3k
views
rBiopaxParser, Reactome and namespaces
rBiopaxParser
rBiopaxParser
updated 10.9 years ago by
Frank Kramer
▴ 60 • written 11.0 years ago by
Paul Shannon
▴ 470
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