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53
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ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
3 days ago
Shaimaa Gamal
• 0
5
votes
3
replies
314
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 10 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Shaimaa Gamal
• 0
1
vote
3
replies
283
views
Lib sizes in the DGE object are different from original lib sizes
edgeR
DifferentialExpression
updated 6 weeks ago by
James W. MacDonald
65k • written 6 weeks ago by
Shaimaa Gamal
• 0
2
votes
1
reply
321
views
Normalization factors when there is a possible unidirectional expression
limma
Normalization
DifferentialExpression
updated 3 months ago by
ATpoint
★ 4.1k • written 3 months ago by
Shaimaa Gamal
• 0
3
votes
2
replies
321
views
Design matrix after RUVg correction
RUVSeq
limma
DifferentialExpression
3 months ago
Shaimaa Gamal
• 0
4
votes
3
replies
383
views
voom with quality weights after RUV correction
RUVSeq
limma
DifferentialExpression
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
Shaimaa Gamal
• 0
2
votes
3
replies
390
views
TMM normalization after RUVg correction
RUVSeq
limma
DifferentialExpression
edgeR
Normalization
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
Shaimaa Gamal
• 0
0
votes
2
replies
327
views
PCA after DESeq2
DESeq2
PrincipalComponent
prin
DifferentialExpression
updated 3 months ago by
Michael Love
42k • written 3 months ago by
Shaimaa Gamal
• 0
5
votes
6
replies
607
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression
rnaseqGene
RNASeqData
4 months ago • updated 3 months ago
Shaimaa Gamal
• 0
4
votes
6
replies
651
views
filtering lowly expressed reads
RNASeq
limma
DifferentialExpression
Preprocessing
updated 3 months ago by
Gordon Smyth
50k • written 4 months ago by
Shaimaa Gamal
• 0
3
votes
1
reply
330
views
Dataset imbalance
RNASeq
DifferentialExpression
RnaSeqSampleSizeData
RnaSeqSampleSize
updated 4 months ago by
Gordon Smyth
50k • written 4 months ago by
Shaimaa Gamal
• 0
0
votes
2
replies
586
views
RNA seq differential expression analysis
DEGseq
RNASeqData
limma
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
Shaimaa Gamal
• 0
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