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433
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Batch correction for microarray
BatchEffect sva MicroarrayData
9 months ago Shaimaa Gamal • 0
1
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1
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1.4k
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Differential expression analysis using two TCGA datasets
DifferentialExpression TCGAbiolinks RNASeq
updated 9 months ago by ★ 5.0k • written 9 months ago by • 0
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2
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760
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ReactomeGSA adjustment for confounding variables
BiologicalQuestion ReactomeGSA BatchEffect
written 16 months ago by • 0
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1
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784
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ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
updated 16 months ago by ▴ 20 • written 20 months ago by • 0
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1
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1.7k
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Comment: Comment: Log-cpm values from limma
20 months ago Shaimaa Gamal • 0
5
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3
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1.7k
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Log-cpm values from limma
limma edgeR RNASeq
updated 20 months ago by 53k • written 21 months ago by • 0
0
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1
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971
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
21 months ago Shaimaa Gamal • 0
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3
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971
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Lib sizes in the DGE object are different from original lib sizes
edgeR DifferentialExpression
updated 21 months ago by 68k • written 21 months ago by • 0
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0
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9.7k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
22 months ago Shaimaa Gamal • 0
2
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1
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841
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Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 23 months ago by ★ 5.0k • written 23 months ago by • 0
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0
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1.1k
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Comment: Comment: Design matrix after RUVg correction
23 months ago Shaimaa Gamal • 0
3
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2
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1.1k
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Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
23 months ago Shaimaa Gamal • 0
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1
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1.2k
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Comment: Comment: voom with quality weights after RUV correction
23 months ago Shaimaa Gamal • 0
4
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3
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1.2k
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voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 23 months ago by 53k • written 23 months ago by • 0
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1
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1.2k
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Comment: Comment: TMM normalization after RUVg correction
23 months ago Shaimaa Gamal • 0
2
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3
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1.2k
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TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 23 months ago by 68k • written 23 months ago by • 0
0
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2
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880
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PCA after DESeq2
DESeq2 PrincipalComponent prin DifferentialExpression
updated 24 months ago by 43k • written 24 months ago by • 0
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0
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880
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Comment: Comment: PCA after DESeq2
24 months ago Shaimaa Gamal • 0
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0
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1.6k
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
2.0 years ago Shaimaa Gamal • 0
0
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1
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1.6k
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
2.0 years ago Shaimaa Gamal • 0
0
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1
reply
1.6k
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
2.0 years ago Shaimaa Gamal • 0
5
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6
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1.6k
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
2.0 years ago Shaimaa Gamal • 0
0
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1
reply
9.7k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
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0
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1.8k
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Comment: Comment: filtering lowly expressed reads
2.0 years ago Shaimaa Gamal • 0
0
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1
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1.8k
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Comment: Comment: filtering lowly expressed reads
2.0 years ago Shaimaa Gamal • 0
4
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6
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1.8k
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 23 months ago by 53k • written 2.0 years ago by • 0
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0
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13k
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Comment: Comment: threshold to filter lowly expressed genes
2.0 years ago Shaimaa Gamal • 0
0
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0
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1.8k
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Comment: Comment: filtering lowly expressed reads
2.0 years ago Shaimaa Gamal • 0
3
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1
reply
952
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Dataset imbalance
RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize
updated 2.0 years ago by 53k • written 2.0 years ago by • 0
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0
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2.1k
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Comment: Comment: DESeq2: DE Analysis with very imbalanced samples per condition
2.0 years ago Shaimaa Gamal • 0
0
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0
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3.2k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
2.1 years ago Shaimaa Gamal • 0
0
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1
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3.2k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
2.1 years ago Shaimaa Gamal • 0
0
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1
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9.7k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
2.1 years ago Shaimaa Gamal • 0
0
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2
replies
1.1k
views
RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 2.6 years ago by 53k • written 2.6 years ago by • 0
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