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3
votes
1
reply
182
views
Log-cpm values from limma
limma edgeR RNASeq
updated 20 days ago by 50k • written 21 days ago by • 0
0
votes
1
reply
265
views
Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
4 weeks ago Shaimaa Gamal • 0
1
vote
3
replies
265
views
Lib sizes in the DGE object are different from original lib sizes
edgeR DifferentialExpression
updated 4 weeks ago by 65k • written 4 weeks ago by • 0
0
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0
replies
7.3k
views
Comment: Comment: Normalised counts from RUVg in RUVSeq
6 weeks ago Shaimaa Gamal • 0
2
votes
1
reply
306
views
Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 12 weeks ago by ★ 4.1k • written 12 weeks ago by • 0
0
votes
0
replies
302
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Comment: Comment: Design matrix after RUVg correction
3 months ago Shaimaa Gamal • 0
3
votes
2
replies
302
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Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
3 months ago Shaimaa Gamal • 0
0
votes
1
reply
365
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Comment: Comment: voom with quality weights after RUV correction
3 months ago Shaimaa Gamal • 0
4
votes
3
replies
365
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voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 3 months ago by 50k • written 3 months ago by • 0
0
votes
1
reply
375
views
Comment: Comment: TMM normalization after RUVg correction
3 months ago Shaimaa Gamal • 0
2
votes
3
replies
375
views
TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 3 months ago by 65k • written 3 months ago by • 0
0
votes
2
replies
305
views
PCA after DESeq2
DESeq2 PrincipalComponent prin DifferentialExpression
updated 3 months ago by 42k • written 3 months ago by • 0
0
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0
replies
305
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Comment: Comment: PCA after DESeq2
3 months ago Shaimaa Gamal • 0
0
votes
0
replies
562
views
Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Shaimaa Gamal • 0
0
votes
1
reply
562
views
Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Shaimaa Gamal • 0
0
votes
1
reply
562
views
Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Shaimaa Gamal • 0
5
votes
6
replies
562
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
3 months ago Shaimaa Gamal • 0
0
votes
1
reply
7.3k
views
Comment: Comment: Normalised counts from RUVg in RUVSeq
updated 3 months ago by 65k • written 3 months ago by • 0
0
votes
0
replies
608
views
Comment: Comment: filtering lowly expressed reads
3 months ago Shaimaa Gamal • 0
0
votes
1
reply
608
views
Comment: Comment: filtering lowly expressed reads
3 months ago Shaimaa Gamal • 0
4
votes
6
replies
608
views
filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 3 months ago by 50k • written 3 months ago by • 0
0
votes
0
replies
10k
views
Comment: Comment: threshold to filter lowly expressed genes
3 months ago Shaimaa Gamal • 0
0
votes
0
replies
608
views
Comment: Comment: filtering lowly expressed reads
3 months ago Shaimaa Gamal • 0
3
votes
1
reply
305
views
Dataset imbalance
RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize
updated 3 months ago by 50k • written 3 months ago by • 0
0
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0
replies
1.2k
views
Comment: Comment: DESeq2: DE Analysis with very imbalanced samples per condition
3 months ago Shaimaa Gamal • 0
0
votes
0
replies
1.5k
views
Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
5 months ago Shaimaa Gamal • 0
0
votes
1
reply
1.5k
views
Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
5 months ago Shaimaa Gamal • 0
0
votes
1
reply
7.3k
views
Comment: Comment: Normalised counts from RUVg in RUVSeq
5 months ago Shaimaa Gamal • 0
0
votes
2
replies
576
views
RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 10 months ago by 50k • written 10 months ago by • 0
29 results • Page 1 of 1
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