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0
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2
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399
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ReactomeGSA adjustment for confounding variables
BiologicalQuestion ReactomeGSA BatchEffect
written 3 months ago by • 0
0
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1
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374
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ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
updated 3 months ago by ▴ 20 • written 7 months ago by • 0
0
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1
reply
924
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Comment: Comment: Log-cpm values from limma
7 months ago Shaimaa Gamal • 0
5
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3
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924
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Log-cpm values from limma
limma edgeR RNASeq
updated 7 months ago by 52k • written 8 months ago by • 0
0
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1
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561
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
8 months ago Shaimaa Gamal • 0
1
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3
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561
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Lib sizes in the DGE object are different from original lib sizes
edgeR DifferentialExpression
updated 8 months ago by 67k • written 8 months ago by • 0
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0
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8.2k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
9 months ago Shaimaa Gamal • 0
2
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1
reply
529
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Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 10 months ago by ★ 4.6k • written 10 months ago by • 0
0
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0
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598
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Comment: Comment: Design matrix after RUVg correction
10 months ago Shaimaa Gamal • 0
3
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2
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598
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Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
10 months ago Shaimaa Gamal • 0
0
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1
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738
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Comment: Comment: voom with quality weights after RUV correction
10 months ago Shaimaa Gamal • 0
4
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3
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738
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voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 10 months ago by 52k • written 10 months ago by • 0
0
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1
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690
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Comment: Comment: TMM normalization after RUVg correction
10 months ago Shaimaa Gamal • 0
2
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3
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690
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TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 10 months ago by 67k • written 10 months ago by • 0
0
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2
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556
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PCA after DESeq2
DESeq2 PrincipalComponent prin DifferentialExpression
updated 10 months ago by 43k • written 10 months ago by • 0
0
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0
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556
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Comment: Comment: PCA after DESeq2
10 months ago Shaimaa Gamal • 0
0
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0
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995
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
11 months ago Shaimaa Gamal • 0
0
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1
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995
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
11 months ago Shaimaa Gamal • 0
0
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1
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995
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
11 months ago Shaimaa Gamal • 0
5
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6
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995
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
11 months ago Shaimaa Gamal • 0
0
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1
reply
8.2k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
updated 11 months ago by 67k • written 11 months ago by • 0
0
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0
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1.1k
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Comment: Comment: filtering lowly expressed reads
11 months ago Shaimaa Gamal • 0
0
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1
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1.1k
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Comment: Comment: filtering lowly expressed reads
11 months ago Shaimaa Gamal • 0
4
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6
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1.1k
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 10 months ago by 52k • written 11 months ago by • 0
0
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0
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11k
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Comment: Comment: threshold to filter lowly expressed genes
11 months ago Shaimaa Gamal • 0
0
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0
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1.1k
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Comment: Comment: filtering lowly expressed reads
11 months ago Shaimaa Gamal • 0
3
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1
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607
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Dataset imbalance
RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize
updated 11 months ago by 52k • written 11 months ago by • 0
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0
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1.5k
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Comment: Comment: DESeq2: DE Analysis with very imbalanced samples per condition
11 months ago Shaimaa Gamal • 0
0
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0
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2.2k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
12 months ago Shaimaa Gamal • 0
0
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1
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2.2k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
12 months ago Shaimaa Gamal • 0
0
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1
reply
8.2k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
12 months ago Shaimaa Gamal • 0
0
votes
2
replies
761
views
RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 18 months ago by 52k • written 18 months ago by • 0
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