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Comment: Comment: sva: get a sv for RIN scores
11 months ago gabriel.hoffman ▴ 170
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1
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1.2k
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Comment: Comment: Merge Replicates vs Mixed Model
11 months ago gabriel.hoffman ▴ 170
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1
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1.2k
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Comment: Comment: Merge Replicates vs Mixed Model
11 months ago gabriel.hoffman ▴ 170
1
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1
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860
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Comment: Comment: makeContrastsDream for Interaction
11 months ago gabriel.hoffman ▴ 170
1
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2
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1.5k
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Answer: Answer: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
15 months ago gabriel.hoffman ▴ 170
1
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1
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1.2k
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Comment: Comment: Differences in Limma and Dreamlet random effects from confounded dataset
16 months ago gabriel.hoffman ▴ 170
1
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1
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1.2k
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Comment: Comment: Differences in Limma and Dreamlet random effects from confounded dataset
16 months ago gabriel.hoffman ▴ 170
1
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0
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990
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Comment: Comment: Can I adjust weights by group in dreamlet(), like in voomByGroup(), with a rando
17 months ago gabriel.hoffman ▴ 170
1
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1
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951
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Comment: Comment: significant difference of p-values with dream() after updating VariancePartition
19 months ago gabriel.hoffman ▴ 170
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1
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2.3k
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Answer: Answer: BiocParallel serialization errors on Windows
23 months ago gabriel.hoffman ▴ 170
0
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1
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818
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Issue with weights in voomLmFit()
limma
updated 12 months ago by 53k • written 2.1 years ago by ▴ 170
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1
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1.9k
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Comment: Comment: How long does it usually take to complete dream() from start to finish?
2.2 years ago gabriel.hoffman ▴ 170
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1
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1.9k
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Comment: Comment: How long does it usually take to complete dream() from start to finish?
2.2 years ago gabriel.hoffman ▴ 170
0
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1
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1.9k
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Comment: Comment: How long does it usually take to complete dream() from start to finish?
2.2 years ago gabriel.hoffman ▴ 170
0
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1
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1.9k
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Answer: Answer: How long does it usually take to complete dream() from start to finish?
2.2 years ago gabriel.hoffman ▴ 170
0
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1
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2.9k
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Answer: Answer: How many parameters should be included in the model design for deseq2?
2.6 years ago gabriel.hoffman ▴ 170
0
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1
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1.9k
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Comment: Comment: Semi-technical replicates and voom sample weights
2.7 years ago gabriel.hoffman ▴ 170
0
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0
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1.6k
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Comment: Comment: Limma: posterior distribution of error variance
3.0 years ago gabriel.hoffman ▴ 170
0
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5
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1.6k
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Limma: posterior distribution of error variance
limma
3.0 years ago gabriel.hoffman ▴ 170
0
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0
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1.6k
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Comment: Comment: Limma: posterior distribution of error variance
3.0 years ago gabriel.hoffman ▴ 170
0
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1
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2.4k
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Comment: C: How does BiocParallel export variables to threads?
5.4 years ago gabriel.hoffman ▴ 170
7
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4
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2.4k
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How does BiocParallel export variables to threads?
BiocParallel SnowParam parallel
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 170
2
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1
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3.8k
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Answer: A: dream vignette says limma-voom repeated measures two-group comparison needs two
6.1 years ago gabriel.hoffman ▴ 170
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0
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2.5k
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Answer: A: Results from variancePartition not matching those from lme4
6.1 years ago gabriel.hoffman ▴ 170
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0
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3.0k
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Answer: A: Blocking factor in limma/voom vs. variancePartition/dream analysis.
6.1 years ago gabriel.hoffman ▴ 170
2
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1
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2.5k
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Answer: A: Results from variancePartition not matching those from lme4
6.2 years ago gabriel.hoffman ▴ 170
1
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1
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2.5k
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Answer: A: Results from variancePartition not matching those from lme4
6.2 years ago gabriel.hoffman ▴ 170
0
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1
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2.5k
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Comment: C: Results from variancePartition not matching those from lme4
6.2 years ago gabriel.hoffman ▴ 170
0
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0
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3.0k
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Comment: C: BiocParallel: What its the best way to pass large a dataset for parallel process
6.3 years ago gabriel.hoffman ▴ 170
0
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1
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3.0k
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Comment: C: BiocParallel: What its the best way to pass large a dataset for parallel process
6.3 years ago gabriel.hoffman ▴ 170
1
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4
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3.0k
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BiocParallel: What its the best way to pass large a dataset for parallel processing?
bioconductor bplapply bpiterate iterator BiocParallel
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 170
2
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1
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3.0k
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Answer: A: Blocking factor in limma/voom vs. variancePartition/dream analysis.
6.4 years ago gabriel.hoffman ▴ 170
1
vote
1
reply
937
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Bug report for GenomicRanges
genomicranges
updated 7.0 years ago by ★ 11k • written 7.0 years ago by ▴ 170
0
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1
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1.2k
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Gene set enrichment analysis with ChIP-seq data using test statistics directly
limma csaw
updated 7.2 years ago by ★ 29k • written 7.2 years ago by ▴ 170
0
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0
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2.4k
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Answer: A: Making package compatible with old version of R/Bioconductor
9.5 years ago gabriel.hoffman ▴ 170
1
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5
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2.4k
views
Making package compatible with old version of R/Bioconductor
bioconductor R software error biocinstaller
9.5 years ago gabriel.hoffman ▴ 170
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