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1
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2
replies
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DESeq2 normalization and TPM
deseq2
updated 3.8 years ago by 42k • written 3.8 years ago by ▴ 100
0
votes
1
reply
1.1k
views
DESeq2 normalization single cell
deseq2
updated 3.8 years ago by 42k • written 3.8 years ago by ▴ 100
0
votes
1
reply
1.2k
views
makeTxDbFromGFF warning meaning
GenomicFeatures
updated 4.0 years ago by 65k • written 4.0 years ago by ▴ 100
0
votes
11
replies
1.2k
views
DESeq2 contrast and complex comparisons
deseq2
updated 4.1 years ago by 42k • written 4.1 years ago by ▴ 100
0
votes
1
reply
925
views
rtracklayer import bigwig error
rtracklayer
updated 15 months ago by ▴ 20 • written 4.8 years ago by ▴ 100
0
votes
1
reply
674
views
Bad replicate DESeq2
deseq2
updated 5.9 years ago by 42k • written 5.9 years ago by ▴ 100
1
vote
3
replies
1.1k
views
find fold change in DESeq2 results
deseq2
updated 6.9 years ago by 42k • written 6.9 years ago by ▴ 100
0
votes
25
replies
2.8k
views
deseq2 course experiment
deseq2
7.0 years ago • updated 6.9 years ago ribioinfo ▴ 100
1
vote
7
replies
3.5k
views
DESeq2 condition table
deseq2
updated 7.0 years ago by 42k • written 7.0 years ago by ▴ 100
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.1 years ago ribioinfo ▴ 100
3
votes
4
replies
3.2k
views
Single cells batch effects
RUV single cell batch effect
7.1 years ago ribioinfo ▴ 100
1
vote
15
replies
4.6k
views
DESeq2 different experiments comparison
deseq2
7.3 years ago ribioinfo ▴ 100
0
votes
3
replies
829
views
Question about DESeq2 desgin
deseq2
updated 7.3 years ago by 42k • written 7.3 years ago by ▴ 100
0
votes
4
replies
1.4k
views
tximport RSEM error
tximport
updated 7.3 years ago by 42k • written 7.3 years ago by ▴ 100
0
votes
23
replies
2.6k
views
VariantAnnotation geno function
variantannotation
7.5 years ago ribioinfo ▴ 100
0
votes
2
replies
1.2k
views
small RNAs quantification
smallrna counts
7.6 years ago ribioinfo ▴ 100
0
votes
2
replies
2.2k
views
Homo.sapiens select error
homo.sapiens
updated 7.8 years ago by ★ 13k • written 7.8 years ago by ▴ 100
0
votes
2
replies
1.0k
views
vcf intersection variantannotation
variantannotation
updated 7.9 years ago by ★ 11k • written 7.9 years ago by ▴ 100
1
vote
1
reply
810
views
VariantAnnotation quality filter
variantannotation
7.9 years ago ribioinfo ▴ 100
0
votes
3
replies
4.8k
views
Biostrings character vector conversion
biostrings
7.9 years ago ribioinfo ▴ 100
0
votes
2
replies
849
views
Estimate dispersion DESeq2 and gene number
deseq2
8.0 years ago • updated 7.9 years ago ribioinfo ▴ 100
0
votes
3
replies
1.1k
views
VariantAnnotation dbSNPs strand
variantannotation
8.0 years ago ribioinfo ▴ 100
0
votes
2
replies
1.0k
views
GenomicFeatures coordinates UCSC
genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene
8.1 years ago ribioinfo ▴ 100
1
vote
3
replies
973
views
Extract information from GenomicRanges
genomicranges genomicfeatures
8.1 years ago ribioinfo ▴ 100
3
votes
4
replies
2.9k
views
DESeq is better than DESeq2?
deseq2 deseq
8.1 years ago ribioinfo ▴ 100
2
votes
4
replies
12k
views
DESeq2 FPKM normalization
deseq2 normalization
8.3 years ago • updated 8.2 years ago ribioinfo ▴ 100
17
votes
9
replies
33k
views
DESeq2 and shrinkage of log2 fold changes
deseq2
updated 3.3 years ago by 42k • written 8.3 years ago by ▴ 100
13
votes
11
replies
17k
views
edgeR TMM values
edger
8.3 years ago ribioinfo ▴ 100
0
votes
5
replies
1.6k
views
DESeq2 contrast vs no contrast
deseq2
8.3 years ago ribioinfo ▴ 100
4
votes
21
replies
11k
views
DESeq2 and ComBat
deseq2 combat
updated 8.3 years ago by ▴ 610 • written 8.3 years ago by ▴ 100
0
votes
5
replies
6.6k
views
DESeq2 old versions
DESeq2
8.4 years ago • updated 8.3 years ago ribioinfo ▴ 100
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