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Comment: Comment: gene set enrichment analysis with enrichKEGG (clusterProfiler) returns very few
16 months ago Emilia ▴ 30
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gene set enrichment analysis with enrichKEGG (clusterProfiler) returns very few enriched pathways
clusterProfiler KEGG GSEA
17 months ago • updated 16 months ago Emilia ▴ 30
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Comment: Comment: Plot terms with a NES < 0 GSEA results from gseGO
17 months ago Emilia ▴ 30
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Comment: Comment: Can I create a gene set using GAGE?
17 months ago Emilia ▴ 30
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Can I create a gene set using GAGE?
gage pathview gageData
written 17 months ago by ▴ 30
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Comment: Comment: Cut down genes displayed on x axis from enrichPlot's heatplot() function
17 months ago Emilia ▴ 30
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Comment: Comment: color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positi
17 months ago Emilia ▴ 30
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2.5k
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Comment: Comment: color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positi
18 months ago Emilia ▴ 30
0
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1
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2.5k
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Comment: Comment: color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positi
18 months ago • updated 17 months ago Emilia ▴ 30
2
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6
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2.5k
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color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
18 months ago • updated 17 months ago Emilia ▴ 30
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0
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475
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Comment: Comment: loadTableData function from RCy3 returns "Failed to load data: Provided key colu
18 months ago Emilia ▴ 30
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1
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475
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Comment: Comment: loadTableData function from RCy3 returns "Failed to load data: Provided key colu
18 months ago Emilia ▴ 30
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4
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1.2k
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I want to make a geneList for clusterProfiler analysis but I get "error in do.call( cbind lapply(x is.na )) variable names are limited to 10000 bytes"
clusterProfiler
18 months ago Emilia ▴ 30
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0
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1.2k
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Comment: Comment: I want to make a geneList for clusterProfiler analysis but I get "error in do.ca
18 months ago Emilia ▴ 30
0
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1
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1.2k
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Comment: Comment: I want to make a geneList for clusterProfiler analysis but I get "error in do.ca
18 months ago Emilia ▴ 30
1
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3
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475
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
18 months ago Emilia ▴ 30
4
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3
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587
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Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
19 months ago Emilia ▴ 30
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0
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587
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Comment: Comment: Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some o
19 months ago Emilia ▴ 30
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