0
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29
replies
2.5k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges nullranges
updated 11 hours ago by 41k • written 15 months ago by • 0
8
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7
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1.7k
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SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 1 hour ago by • 0 • written 6.7 years ago by ▴ 80
0
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5
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2.8k
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DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 12 hours ago Henrik Bengtsson ★ 2.4k
3
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1
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458
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
updated 5 hours ago by 50k • written 3 days ago by ▴ 10
0
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1
reply
47
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Method to find pathways different between 2 groups
fgsea GSVA CAMERA
updated 5 hours ago by 50k • written 8 hours ago by • 0
1
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1
reply
76
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Handling multiple differential expression comparisons
DESeq2
updated 22 hours ago by 41k • written 2 days ago by ▴ 10
2
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2
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89
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fgsea significant result
fgsea
1 day ago • updated 15 hours ago Chris • 0
2
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3
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119
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package goseq seems to be not available on the latest version of R
goseq
updated 9 hours ago by 50k • written 2 days ago by ▴ 20
0
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20
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Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
13 hours ago robersy • 0
0
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1
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15
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Couldn't connect to server while using "pathways"
DESeq2
updated 10 minutes ago by ★ 4.1k • written 2 hours ago by • 0
10 results • Page 1 of 1
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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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