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normalization across different species for DESeq2 analysis
DESeq2
normalization
Normalization
acrossspecies
1 hour ago
piemmea
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Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
updated 2 hours ago by
Guido Hooiveld
★ 3.9k • written 3 hours ago by
Yveto
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How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 2 hours ago by
Michael Love
42k • written 15 months ago by
Poonam
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DEXSeq design formula for multiple variable
DEXSeq
3 hours ago • updated 2 hours ago
Sara
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ChAMP installation issue
Cha
ChAMP
updated 6 hours ago by
shepherl
3.9k • written 13 hours ago by
e1271094
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Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 8 hours ago by
Guido Hooiveld
★ 3.9k • written 1 day ago by
aogunbaw
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2
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error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
6 days ago • updated 9 hours ago
zzrammal
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Anti-Human APCS Recombinant Antibody (Dezamizumab)
healthyFlowData
14 hours ago
Lupe
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Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
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A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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