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4
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88
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
15 hours ago • updated 6 hours ago
arfranco
▴ 130
0
votes
1
reply
148
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
updated 8 hours ago by
Gordon Smyth
50k • written 17 hours ago by
gene_bioconductor
▴ 10
0
votes
1
reply
56
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 13 hours ago by
Gordon Smyth
50k • written 17 hours ago by
z_bahari
• 0
0
votes
1
reply
55
views
Gene-by-sample covariates in limma
Metabolomics
limma
updated 13 hours ago by
Gordon Smyth
50k • written 17 hours ago by
c53aba27
• 0
0
votes
0
replies
18
views
flowStats for CyTOF
flowStats
19 hours ago
tholmes
• 0
0
votes
2
replies
56
views
DESeq2 v1.35.0
DESeq2
updated 19 hours ago by
Michael Love
41k • written 20 hours ago by
Espresso
• 0
0
votes
0
replies
24
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
21 hours ago
yvonneh
• 0
0
votes
0
replies
24
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
21 hours ago
Ian D.
▴ 70
0
votes
1
reply
35
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 1 day ago by
4r-rtg
• 0
0
votes
2
replies
84
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
1 day ago • updated 13 hours ago
kcarey
• 0
0
votes
2
replies
96
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
2 days ago • updated 21 hours ago
Ian D.
▴ 70
0
votes
2
replies
93
views
Timecourse RNASeq analysis
DESeq2
ImpulseDE2
timecour
timecoursedata
moanin
3 days ago • updated 3 hours ago
Aurora
• 0
0
votes
0
replies
89
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
8 days ago • updated 3 hours ago
glaciya2018
• 0
5
votes
6
replies
2.8k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 19 hours ago by
James W. MacDonald
65k • written 2.3 years ago by
yanchangjian2019
• 0
14 results • Page
1 of 1
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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