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simpleaffy
•
reset
2
votes
4
replies
482
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
4 months ago
yanchangjian2019
• 0
0
votes
1
reply
282
views
Error using simpleaffy
software error
simpleaffy
genefilter
updated 2.7 years ago by
James W. MacDonald
59k • written 2.7 years ago by
jordiroval
• 0
4
votes
3
replies
601
views
GCRMA not working inside tryCatch block in R
gcrma
simpleaffy
error handling
trycatch
updated 3.6 years ago by
James W. MacDonald
59k • written 3.6 years ago by
perdedorium
• 0
2
votes
8
replies
3.0k
views
Clariom D Human Microarray CDF file to package
simpleaffy
makecdfenv
5.7 years ago
jayme.rickman
• 0
0
votes
0
replies
765
views
Export expressionSet to ArrayExpress "processed data"
expressionset
simpleaffy
arrayexpress
tsv
5.8 years ago
Steffen Neumann
▴ 30
0
votes
1
reply
650
views
simpleaffy issue with empty PairComp calls slot
simpleaffy
microarray
r
updated 6.8 years ago by
James W. MacDonald
59k • written 6.8 years ago by
mgrieshop
• 0
1
vote
3
replies
1.5k
views
QC probes in HTA2-0
affy
qc
simpleaffy
HTA
updated 7.2 years ago by
James W. MacDonald
59k • written 7.2 years ago by
Guilherme Rocha
▴ 40
1
vote
3
replies
1.4k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy
affy
affyQCReport
7.3 years ago
federico.comoglio
▴ 100
0
votes
3
replies
931
views
Is a subset of my arrays from degraded RNA?
Microarray
GO
Clustering
affy
affyPLM
simpleaffy
Microarray
GO
Clustering
affy
affyPLM
7.8 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
1.2k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
8.6 years ago
b a
▴ 40
0
votes
0
replies
719
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
8.7 years ago
b a
▴ 40
0
votes
3
replies
6.6k
views
Error: cannot allocate vector of size
gcrma
simpleaffy
gcrma
simpleaffy
updated 8.9 years ago by
James W. MacDonald
59k • written 8.9 years ago by
chittabrata mal
▴ 50
0
votes
3
replies
871
views
simple
GO
simpleaffy
GO
simpleaffy
updated 8.9 years ago by
James W. MacDonald
59k • written 8.9 years ago by
Guest User
★ 12k
0
votes
1
reply
818
views
Problem when loading simpleaffy package
simpleaffy
simpleaffy
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
Michael Steeves
▴ 40
0
votes
2
replies
975
views
results.summary function returns error
Microarray
Annotation
hgu133a
simpleaffy
Microarray
Annotation
hgu133a
simpleaffy
updated 9.5 years ago by
James W. MacDonald
59k • written 9.5 years ago by
Guest User
★ 12k
0
votes
0
replies
812
views
Issue with Genome Graphs
Annotation
simpleaffy
oligo
GenomeGraphs
frma
Annotation
simpleaffy
oligo
GenomeGraphs
9.5 years ago
Jeremy Ng
▴ 180
0
votes
0
replies
813
views
Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy
simpleaffy
9.6 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
884
views
library(simpleaffy) error
simpleaffy
simpleaffy
9.6 years ago
Matthew Thornton
▴ 350
0
votes
1
reply
1.7k
views
simpleaffy() not recognizing cdf file
cdf
simpleaffy
cdf
simpleaffy
updated 9.7 years ago by
James W. MacDonald
59k • written 9.7 years ago by
Guest User
★ 12k
0
votes
0
replies
841
views
Odd warning in simpleaffy, using quality control
cdf
simpleaffy
cdf
simpleaffy
10.1 years ago
ejulia
▴ 10
0
votes
1
reply
1.9k
views
Mas5 log transformed data
Microarray
Normalization
simpleaffy
Microarray
Normalization
simpleaffy
updated 10.1 years ago by
James W. MacDonald
59k • written 10.1 years ago by
Guest User
★ 12k
0
votes
2
replies
1.2k
views
Odd warning in simpleaffy, using quality control
cdf
probe
simpleaffy
ArrayExpress
cdf
probe
simpleaffy
ArrayExpress
updated 10.2 years ago by
David Westergaard
▴ 280 • written 10.2 years ago by
Maciej Jończyk
▴ 720
0
votes
0
replies
868
views
Odd warning in simpleaffy, using quality control
cdf
simpleaffy
ArrayExpress
cdf
simpleaffy
ArrayExpress
10.2 years ago
David Westergaard
▴ 280
0
votes
1
reply
646
views
[simpleaffy] maizecdf.qcdef
simpleaffy
simpleaffy
10.7 years ago
Maciej Jończyk
▴ 720
0
votes
4
replies
1.1k
views
Microarray query
simpleaffy
simpleaffy
updated 11.1 years ago by
viritha kaza
▴ 580 • written 11.1 years ago by
Umme Rummana
▴ 40
0
votes
1
reply
774
views
(no subject)
simpleaffy
simpleaffy
updated 11.1 years ago by
Steve Lianoglou
13k • written 11.1 years ago by
Umme Rummana
▴ 40
0
votes
0
replies
774
views
quality control of affy Chips for miRNA
miRNA
cdf
probe
affy
simpleaffy
affyQCReport
affycoretools
arrayQualityMetrics
miRNA
cdf
11.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
713
views
quality control of affy Chips for miRNA
miRNA
cdf
affy
simpleaffy
affyQCReport
affycoretools
miRNA
cdf
affy
simpleaffy
updated 11.2 years ago by
James W. MacDonald
59k • written 11.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
678
views
Quality Control of Exon arrays using xps?
simpleaffy
simpleaffy
updated 11.4 years ago by
cstrato
★ 3.9k • written 11.4 years ago by
Achilleas Pitsillides
▴ 170
0
votes
0
replies
837
views
drosophila2cdf in simpleaffy / affyQCReport
cdf
simpleaffy
affyQCReport
cdf
simpleaffy
affyQCReport
11.5 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.0k
views
one problem about IRanges Package
simpleaffy
IRanges
simpleaffy
IRanges
updated 11.5 years ago by
Vincent J. Carey, Jr.
6.6k • written 11.5 years ago by
cao zongfu
▴ 50
0
votes
0
replies
560
views
Simpleaffy problems
Annotation
probe
affy
matchprobes
simpleaffy
AnnotationDbi
Annotation
probe
affy
11.6 years ago
James W. MacDonald
59k
0
votes
1
reply
631
views
problem in installing simpleaffy packeges
simpleaffy
simpleaffy
updated 12.0 years ago by
Martin Morgan
25k • written 12.0 years ago by
NUTAN CHAUHAN
▴ 20
0
votes
0
replies
652
views
question regarding qc function in simpleaffy package
cdf
affy
simpleaffy
cdf
affy
simpleaffy
12.1 years ago
Groot, Philip de
▴ 630
0
votes
0
replies
1.1k
views
Error in getCdfInfo(object)
cdf
simpleaffy
cdf
simpleaffy
12.1 years ago
Arun A K
▴ 20
0
votes
0
replies
559
views
question regarding qc function in simpleaffy package
cdf
affy
simpleaffy
cdf
affy
simpleaffy
12.1 years ago
James Anderson
▴ 820
0
votes
0
replies
501
views
question about QC and Simpleaffy package
simpleaffy
simpleaffy
12.3 years ago
James Anderson
▴ 820
0
votes
5
replies
1.1k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf
affy
simpleaffy
cdf
affy
simpleaffy
12.5 years ago
Michael Walter
▴ 160
0
votes
1
reply
902
views
Group samples on heatmap?
simpleaffy
simpleaffy
updated 12.8 years ago by
James W. MacDonald
59k • written 12.8 years ago by
Michael Imbeault
▴ 220
0
votes
3
replies
833
views
qc in simpleaffy
GO
simpleaffy
GO
simpleaffy
13.1 years ago
Mayte Suarez-Farinas
▴ 510
0
votes
1
reply
1.1k
views
SimpeAffy: how to get/generate qcdef file?
cdf
probe
affy
simpleaffy
cdf
probe
affy
simpleaffy
updated 13.3 years ago by
claire wilson
▴ 30 • written 13.3 years ago by
Renaud Gaujoux
▴ 170
0
votes
0
replies
651
views
SimpeAffy: how to get/generate qcdef file?
cdf
simpleaffy
cdf
simpleaffy
13.3 years ago
Renaud Gaujoux
▴ 170
0
votes
2
replies
990
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation
mouse4302
simpleaffy
GLAD
Annotation
mouse4302
simpleaffy
GLAD
updated 13.3 years ago by
James W. MacDonald
59k • written 13.3 years ago by
Marietta Herrmann
▴ 40
0
votes
0
replies
719
views
simpleaffy with hgu133plus2
hgu133plus2
simpleaffy
hgu133plus2
simpleaffy
13.4 years ago
dorothyc
▴ 140
0
votes
2
replies
779
views
Simpleaffy: how are 3/5 ratios calculated
graph
simpleaffy
PROcess
graph
simpleaffy
PROcess
updated 13.7 years ago by
Yogi Sundaravadanam
▴ 320 • written 13.7 years ago by
Ganiraju Manyam
▴ 50
0
votes
1
reply
535
views
Background values
Microarray
gcrma
simpleaffy
Microarray
gcrma
simpleaffy
updated 13.7 years ago by
Wolfgang Huber
13k • written 13.8 years ago by
Louisa A Rispoli/AS/EXP/UTIA
▴ 160
0
votes
1
reply
847
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer
cdf
affy
simpleaffy
affyQCReport
affyio
arrayQualityMetrics
Cancer
cdf
affy
updated 13.8 years ago by
rgentleman
★ 5.5k • written 13.8 years ago by
Yisong Zhen
▴ 200
0
votes
0
replies
654
views
simpleaffy pairwise.comparison problem
simpleaffy
simpleaffy
13.8 years ago
David Ruau
▴ 190
0
votes
12
replies
1.2k
views
Building BioC 2.2 with R 2.7.0
GO
annaffy
simpleaffy
GO
annaffy
simpleaffy
updated 14.0 years ago by
Groot, Philip de
▴ 630 • written 14.0 years ago by
Atro Tossavainen
▴ 160
0
votes
1
reply
549
views
simpleAffy with bovine cdf
cdf
simpleaffy
cdf
simpleaffy
14.1 years ago
Paul Geeleher
★ 1.3k
50 results • Page
1 of 1
Recent ...
Replies
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Got that sir, thanks so much!
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
• 0
Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Answer: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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