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simpleaffy
•
reset
5
votes
4
replies
2.6k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
2.2 years ago
yanchangjian2019
• 0
0
votes
1
reply
679
views
Error using simpleaffy
software error
simpleaffy
genefilter
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
jordiroval
• 0
4
votes
3
replies
1.1k
views
GCRMA not working inside tryCatch block in R
gcrma
simpleaffy
error handling
trycatch
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
perdedorium
• 0
2
votes
8
replies
4.0k
views
Clariom D Human Microarray CDF file to package
simpleaffy
makecdfenv
7.5 years ago
jayme.rickman
• 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset
simpleaffy
arrayexpress
tsv
7.6 years ago
Steffen Neumann
▴ 30
0
votes
1
reply
927
views
simpleaffy issue with empty PairComp calls slot
simpleaffy
microarray
r
updated 8.6 years ago by
James W. MacDonald
65k • written 8.6 years ago by
mgrieshop
• 0
1
vote
3
replies
1.9k
views
QC probes in HTA2-0
affy
qc
simpleaffy
HTA
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
Guilherme Rocha
▴ 40
1
vote
3
replies
1.8k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy
affy
affyQCReport
9.1 years ago
federico.comoglio
▴ 100
0
votes
3
replies
1.3k
views
Is a subset of my arrays from degraded RNA?
Microarray
GO
Clustering
affy
affyPLM
simpleaffy
Microarray
GO
Clustering
affy
affyPLM
9.7 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
1.6k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.5 years ago
b a
▴ 40
0
votes
0
replies
1.0k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.5 years ago
b a
▴ 40
0
votes
3
replies
7.6k
views
Error: cannot allocate vector of size
gcrma
simpleaffy
gcrma
simpleaffy
updated 10.7 years ago by
James W. MacDonald
65k • written 10.7 years ago by
chittabrata mal
▴ 50
0
votes
3
replies
1.2k
views
simple
GO
simpleaffy
GO
simpleaffy
updated 10.7 years ago by
James W. MacDonald
65k • written 10.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Problem when loading simpleaffy package
simpleaffy
simpleaffy
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
Michael Steeves
▴ 40
0
votes
2
replies
1.3k
views
results.summary function returns error
Microarray
Annotation
hgu133a
simpleaffy
Microarray
Annotation
hgu133a
simpleaffy
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Issue with Genome Graphs
Annotation
simpleaffy
oligo
GenomeGraphs
frma
Annotation
simpleaffy
oligo
GenomeGraphs
11.4 years ago
Jeremy Ng
▴ 180
0
votes
0
replies
1.0k
views
Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy
simpleaffy
11.4 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
1.3k
views
library(simpleaffy) error
simpleaffy
simpleaffy
11.4 years ago
Matthew Thornton
▴ 350
0
votes
1
reply
2.0k
views
simpleaffy() not recognizing cdf file
cdf
simpleaffy
cdf
simpleaffy
updated 11.5 years ago by
James W. MacDonald
65k • written 11.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Odd warning in simpleaffy, using quality control
cdf
simpleaffy
cdf
simpleaffy
11.9 years ago
ejulia
▴ 10
0
votes
1
reply
2.4k
views
Mas5 log transformed data
Microarray
Normalization
simpleaffy
Microarray
Normalization
simpleaffy
updated 12.0 years ago by
James W. MacDonald
65k • written 12.0 years ago by
Guest User
★ 13k
0
votes
2
replies
1.7k
views
Odd warning in simpleaffy, using quality control
cdf
probe
simpleaffy
ArrayExpress
cdf
probe
simpleaffy
ArrayExpress
updated 12.1 years ago by
David Westergaard
▴ 280 • written 12.1 years ago by
boczniak767
▴ 720
0
votes
0
replies
1.2k
views
Odd warning in simpleaffy, using quality control
cdf
simpleaffy
ArrayExpress
cdf
simpleaffy
ArrayExpress
12.1 years ago
David Westergaard
▴ 280
0
votes
1
reply
967
views
[simpleaffy] maizecdf.qcdef
simpleaffy
simpleaffy
12.5 years ago
boczniak767
▴ 720
0
votes
4
replies
1.7k
views
Microarray query
simpleaffy
simpleaffy
updated 12.9 years ago by
viritha kaza
▴ 580 • written 12.9 years ago by
Umme Rummana
▴ 40
0
votes
1
reply
1.1k
views
(no subject)
simpleaffy
simpleaffy
updated 12.9 years ago by
Steve Lianoglou
★ 13k • written 12.9 years ago by
Umme Rummana
▴ 40
0
votes
0
replies
1.1k
views
quality control of affy Chips for miRNA
miRNA
cdf
probe
affy
simpleaffy
affyQCReport
affycoretools
arrayQualityMetrics
miRNA
cdf
13.0 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
quality control of affy Chips for miRNA
miRNA
cdf
affy
simpleaffy
affyQCReport
affycoretools
miRNA
cdf
affy
simpleaffy
updated 13.1 years ago by
James W. MacDonald
65k • written 13.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
995
views
Quality Control of Exon arrays using xps?
simpleaffy
simpleaffy
updated 13.3 years ago by
cstrato
★ 3.9k • written 13.3 years ago by
Achilleas Pitsillides
▴ 170
0
votes
0
replies
1.1k
views
drosophila2cdf in simpleaffy / affyQCReport
cdf
simpleaffy
affyQCReport
cdf
simpleaffy
affyQCReport
13.4 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.4k
views
one problem about IRanges Package
simpleaffy
IRanges
simpleaffy
IRanges
updated 13.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.4 years ago by
cao zongfu
▴ 50
0
votes
0
replies
827
views
Simpleaffy problems
Annotation
probe
affy
matchprobes
simpleaffy
AnnotationDbi
Annotation
probe
affy
13.5 years ago
James W. MacDonald
65k
0
votes
1
reply
800
views
problem in installing simpleaffy packeges
simpleaffy
simpleaffy
updated 13.8 years ago by
Martin Morgan
25k • written 13.8 years ago by
NUTAN CHAUHAN
▴ 20
0
votes
0
replies
925
views
question regarding qc function in simpleaffy package
cdf
affy
simpleaffy
cdf
affy
simpleaffy
14.0 years ago
Groot, Philip de
▴ 630
0
votes
0
replies
1.7k
views
Error in getCdfInfo(object)
cdf
simpleaffy
cdf
simpleaffy
14.0 years ago
Arun A K
▴ 20
0
votes
0
replies
890
views
question regarding qc function in simpleaffy package
cdf
affy
simpleaffy
cdf
affy
simpleaffy
14.0 years ago
James Anderson
▴ 820
0
votes
0
replies
749
views
question about QC and Simpleaffy package
simpleaffy
simpleaffy
14.1 years ago
James Anderson
▴ 820
0
votes
5
replies
1.6k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf
affy
simpleaffy
cdf
affy
simpleaffy
14.3 years ago
Michael Walter
▴ 160
0
votes
1
reply
1.3k
views
Group samples on heatmap?
simpleaffy
simpleaffy
updated 14.6 years ago by
James W. MacDonald
65k • written 14.7 years ago by
Michael Imbeault
▴ 220
0
votes
3
replies
1.2k
views
qc in simpleaffy
GO
simpleaffy
GO
simpleaffy
14.9 years ago
Mayte Suarez-Farinas
▴ 510
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf
probe
affy
simpleaffy
cdf
probe
affy
simpleaffy
updated 15.1 years ago by
claire wilson
▴ 30 • written 15.1 years ago by
Renaud Gaujoux
▴ 170
0
votes
0
replies
849
views
SimpeAffy: how to get/generate qcdef file?
cdf
simpleaffy
cdf
simpleaffy
15.1 years ago
Renaud Gaujoux
▴ 170
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation
mouse4302
simpleaffy
GLAD
Annotation
mouse4302
simpleaffy
GLAD
updated 15.1 years ago by
James W. MacDonald
65k • written 15.1 years ago by
Marietta Herrmann
▴ 40
0
votes
0
replies
1.0k
views
simpleaffy with hgu133plus2
hgu133plus2
simpleaffy
hgu133plus2
simpleaffy
15.2 years ago
dorothyc
▴ 140
0
votes
2
replies
1.1k
views
Simpleaffy: how are 3/5 ratios calculated
graph
simpleaffy
PROcess
graph
simpleaffy
PROcess
updated 15.5 years ago by
Yogi Sundaravadanam
▴ 320 • written 15.5 years ago by
Ganiraju Manyam
▴ 50
0
votes
1
reply
789
views
Background values
Microarray
gcrma
simpleaffy
Microarray
gcrma
simpleaffy
updated 15.6 years ago by
Wolfgang Huber
★ 13k • written 15.6 years ago by
Louisa A Rispoli/AS/EXP/UTIA
▴ 160
0
votes
1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer
cdf
affy
simpleaffy
affyQCReport
affyio
arrayQualityMetrics
Cancer
cdf
affy
updated 15.6 years ago by
rgentleman
★ 5.5k • written 15.6 years ago by
Yisong Zhen
▴ 200
0
votes
0
replies
862
views
simpleaffy pairwise.comparison problem
simpleaffy
simpleaffy
15.7 years ago
David Ruau
▴ 190
0
votes
12
replies
2.0k
views
Building BioC 2.2 with R 2.7.0
GO
annaffy
simpleaffy
GO
annaffy
simpleaffy
updated 15.8 years ago by
Groot, Philip de
▴ 630 • written 15.8 years ago by
Atro Tossavainen
▴ 160
0
votes
1
reply
834
views
simpleAffy with bovine cdf
cdf
simpleaffy
cdf
simpleaffy
15.9 years ago
Paul Geeleher
★ 1.3k
50 results • Page
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Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
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Answer: edgeR, 3 x 2 design with a batch effect and contrasts
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Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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