0
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1
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1.2k
views
limma all by all
Microarray limma Microarray limma
updated 11.7 years ago by ▴ 380 • written 11.7 years ago by 53k
0
votes
3
replies
3.0k
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featureCounts segfault
Annotation BSgenome BSgenome Rsubread Annotation BSgenome BSgenome Rsubread
updated 11.7 years ago by ★ 3.6k • written 11.7 years ago by ★ 7.9k
0
votes
4
replies
2.2k
views
Paired comparisons in EdgeR
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ▴ 20
0
votes
1
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1.7k
views
pd.mirna.4.1
pdInfoBuilder pdInfoBuilder
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
votes
1
reply
1.8k
views
Can GAGE be used for transcript set pathway analysis
Pathways gage Pathways gage
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ▴ 100
0
votes
9
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2.6k
views
DESeq2 stuck running
cqn DESeq2 cqn DESeq2
updated 11.7 years ago by 43k • written 11.7 years ago by ★ 13k
0
votes
8
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3.0k
views
gviz data track (heatmap) and title panel questions
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ▴ 190
0
votes
3
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1.8k
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New error in Gviz
Gviz Gviz
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ▴ 40
0
votes
1
reply
798
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Newcommers question on subsetting IRangesList
updated 11.7 years ago by ★ 11k • written 11.7 years ago by ★ 13k
0
votes
1
reply
1.6k
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hg 19 Gene list
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ▴ 260
0
votes
4
replies
1.8k
views
DEXseq ignoreRank
updated 11.7 years ago by 43k • written 11.7 years ago by ▴ 40
0
votes
0
replies
1.4k
views
NaNs in RMA normalization of GSE31312
Normalization cdf Normalization cdf
11.7 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
DESeq2
DESeq2 DESeq2
updated 11.7 years ago by 43k • written 11.7 years ago by ▴ 20
0
votes
1
reply
1.4k
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segfault in rqubic
Microarray rqubic Microarray rqubic
updated 11.7 years ago by ▴ 120 • written 11.7 years ago by ★ 13k
0
votes
1
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905
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limma -roast: probe-level vs gene-level?
probe probe
updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
0
votes
0
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1.0k
views
Allele-specific copy numbers using 450K Illumina methylation microarrays
11.7 years ago Aaerp ▴ 40
0
votes
2
replies
2.7k
views
Best way of presenting "absolute" expression values (edgeR)
RNASeq edgeR RNASeq edgeR
updated 2.9 years ago by 53k • written 11.7 years ago by ▴ 110
0
votes
0
replies
943
views
Convert phylogenetic tree to igraph
11.7 years ago Sana Wajid ▴ 10
0
votes
2
replies
1.4k
views
DESeq2 dispersion estimate gets stuck
DESeq2 DESeq2
updated 11.7 years ago by 43k • written 11.7 years ago by ▴ 30
0
votes
7
replies
2.3k
views
Combat Continuous
11.7 years ago Michael Breen ▴ 380
0
votes
5
replies
1.6k
views
information retrieval from pubmed
Cancer Cancer
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ▴ 230
1
vote
3
replies
2.3k
views
DESeq2 Regularised Log for Clustering of Genes
Clustering DESeq2 Clustering DESeq2
updated 11.7 years ago by ★ 3.8k • written 11.7 years ago by 43k
0
votes
2
replies
1.1k
views
edgeR GLM using factor that varies for each gene
edgeR edgeR
updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
0
votes
2
replies
2.8k
views
CellMix package use with own data matrix
updated 11.7 years ago by ▴ 170 • written 11.7 years ago by ▴ 10
0
votes
4
replies
1.1k
views
edgeR: dispersion estimation
edgeR edgeR
updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
0
votes
9
replies
6.3k
views
DESeq2 transcript level
DESeq2 DESeq2
updated 11.7 years ago by ★ 1.7k • written 11.7 years ago by ▴ 140
0
votes
1
reply
4.3k
views
ChIPseeker: Error in annotatePeak
Sequencing GO annotate ChIPseeker Sequencing GO annotate ChIPseeker
11.7 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
2
replies
1.4k
views
DEXSeqDataSet
updated 11.7 years ago by ★ 1.9k • written 11.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
How to specify Q75 for locfunc in DESeq2 estimateSizeFactors ? (Michael Love) (Simon Anders)
GO GO
11.7 years ago Schnell, Dan ▴ 30
0
votes
10
replies
3.7k
views
Adding annotations to GSE datasets
updated 11.7 years ago by 21k • written 11.7 years ago by ▴ 70
3
votes
0
replies
2.5k
views
DESeq2 with data containing 3 factors or more and outlier detection
11.7 years ago Michael Love 43k
0
votes
4
replies
4.0k
views
Installation of SomaticSignatures
SomaticSignatures SomaticSignatures
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ★ 13k
0
votes
4
replies
2.6k
views
design matrix paired data
limma limma
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
votes
7
replies
1.7k
views
GenomicAlignments and QNAME collision
RNASeq GenomicAlignments RNASeq GenomicAlignments
updated 11.7 years ago by ★ 6.8k • written 11.7 years ago by ▴ 90
0
votes
0
replies
2.5k
views
reading qRT-PCR data
ddCt HTqPCR ReadqPCR ddCt HTqPCR ReadqPCR
11.7 years ago Guest User ★ 13k
0
votes
0
replies
1.6k
views
Please revise this edgeR code
Alignment Organism topGO edgeR Alignment Organism topGO edgeR
11.7 years ago biotech ▴ 160
0
votes
3
replies
1.5k
views
How to specify Q75 for locfunc in DESeq2 estimateSizeFactors ? (Michael Love)
DESeq DESeq2 DESeq DESeq2
updated 11.7 years ago by ★ 3.8k • written 11.7 years ago by ▴ 30
0
votes
1
reply
1.8k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 11.7 years ago by ▴ 30 • written 11.7 years ago by 53k
1
vote
3
replies
4.7k
views
Problem CummeRbund
cummeRbund cummeRbund
updated 11.7 years ago by ▴ 140 • written 11.7 years ago by ★ 13k
0
votes
1
reply
2.1k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 11.7 years ago by ▴ 30 • written 11.7 years ago by ▴ 190
0
votes
1
reply
1.1k
views
error in loading minfi package
minfi minfi
updated 11.7 years ago by ★ 6.5k • written 11.7 years ago by ★ 13k
0
votes
1
reply
701
views
Bioc mailing list captcha image down
updated 11.7 years ago by ★ 8.2k • written 11.7 years ago by 43k
0
votes
1
reply
1.6k
views
error when coercing GenomeData to RangedData: 'no method or default for coercing “XStringViews” to “RangedData”'
BSgenome BSgenome BSgenome BSgenome
updated 11.7 years ago by ★ 11k • written 11.7 years ago by ▴ 40
0
votes
3
replies
1.3k
views
How to do a Vlookup-type function using a value range
updated 11.7 years ago by ▴ 590 • written 11.7 years ago by ▴ 160
0
votes
0
replies
1.7k
views
Is this edgeR code OK?
Alignment Organism topGO edgeR Alignment Organism topGO edgeR
11.7 years ago biotech ▴ 160
0
votes
0
replies
658
views
Any Master in Bioinformatics?
11.7 years ago Ibon Tamayo ▴ 10
0
votes
2
replies
2.8k
views
fail to load BSgenome.Hsapiens.UCSC.hg19
updated 11.7 years ago by 16k • written 11.7 years ago by ▴ 370
0
votes
2
replies
1.7k
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 11.7 years ago by ★ 4.2k • written 11.7 years ago by ▴ 190
0
votes
3
replies
1.3k
views
Mavericks (Mac OS X 10.9) binary Bioconductor packages available for BioC 2.14
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ★ 8.2k
0
votes
1
reply
2.2k
views
getBM and sqldf error - no such table
GO biomaRt GO biomaRt
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
46,712 results • Page 498 of 935
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Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Answer: Where do the filename come from in the LOLA datasets?
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