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4
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1.5k
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Error converting SBML to graph Object using R SBML
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 20
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How to subtract the background from foreground values in GenePix files
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updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
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12.4 years ago Levi Waldron ★ 1.1k
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read.exon( )
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About the state of KEGG-related packages
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updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 680
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How to handle the case a Affymetrix probe set ID mapped to multiple genes?
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12.4 years ago Feng Tian ▴ 110
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Diffbind : use of controlBam
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12.4 years ago Rory Stark ★ 5.2k
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miRNA prediction against a gene list
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RNAseq data normalization without differential expression
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maskBAD package - Errors during creation of mask
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12.4 years ago Ron Rotkopf ▴ 10
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DexSeq extracols option
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Rsubread for paired end SOLID sequencing
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problem with installation package useR2013
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ★ 13k
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Fwd: Conservative results using DEXSeq
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 1.1k
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convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by 16k
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Pathview with non-KEGG organisms?
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12.4 years ago Luo Weijun ★ 1.6k
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ★ 13k
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bumphunter::matchGenes and all=TRUE
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updated 12.4 years ago by ★ 6.5k • written 12.4 years ago by ▴ 30
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Quickest way to convert IDs in a data frame?
updated 12.4 years ago by ★ 1.7k • written 12.4 years ago by ▴ 680
2
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TopGO 0 nontrivial nodes
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12.4 years ago Dario Strbenac ★ 1.6k
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3
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oligo package attaching phenodata for HuGene2.0 ST array
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updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
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Remove samples and probes from Illumina 450K data
minfi minfi
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
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Error in locateVariants
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updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 10
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updated 12.4 years ago by ★ 4.2k • written 12.4 years ago by ★ 13k
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Limma Design for Paired Samples Question
limma limma
12.4 years ago Fazelzadeh, Parastoo ▴ 10
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12.4 years ago Luo Weijun ★ 1.6k
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Pathview published in Bioinformatics
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12.4 years ago km ▴ 100
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Conservative results using DEXSeq
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updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ★ 13k
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Using DESeq normalized gene count to replace FPKM?
Visualization DESeq Visualization DESeq
updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ▴ 10
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Trimming of partial adaptor sequences
Sequencing Cancer Biostrings Sequencing Cancer Biostrings
12.4 years ago Taylor, Sean D ▴ 250
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Suggestion - gene set enrichment of genes against BP and Disease gene sets
Microarray PROcess Microarray PROcess
12.4 years ago Bade ▴ 310
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DiffBind & Chip-exo
HapMap HapMap
12.4 years ago Rory Stark ★ 5.2k
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Problem using getGEO
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 10
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Problem with decideTests - No p-val correction
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updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 310
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Paired RankProducts analysis
12.4 years ago Jon Manning ▴ 90
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Access source code of internal function within R
Rsamtools Rsamtools
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 360
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How to transform a fastq object in granges?
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 40
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12.4 years ago _Bio - Informatics ▴ 20
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6
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ERROR: compilation failed for package XVector
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updated 12.4 years ago by 16k • written 12.4 years ago by ▴ 60
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Question about quality of biological replicates from RNAseq data
RNASeq edgeR RNASeq edgeR
12.4 years ago sheng zhao ▴ 90
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Too many (?) differentially expressed genes - edgeR and DESeq
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 130
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Annotation GO cdf probe Annotation GO cdf probe
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 10
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edgeR - filtering criteria
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 30
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HTqPCR problems
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12.4 years ago Diane Guevremont ▴ 10
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read.HTSeqCounts with count matrix
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Vector for Targest in Tquantile Normalization for different groups
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0
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about the package edgeR
12.4 years ago Georgia Petridou ▴ 10
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Question about quality of biological replicates when using edgeR
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12.4 years ago sheng zhao ▴ 90
0
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Way to extract population specific genotype from 1000 genome
SNP Cancer SNP Cancer
updated 12.4 years ago by 6.7k • written 12.4 years ago by ▴ 260
46,699 results • Page 532 of 934
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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