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6
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5.6k
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ERROR: compilation failed for package XVector
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updated 12.5 years ago by 16k • written 12.5 years ago by ▴ 60
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12.5 years ago sheng zhao ▴ 90
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Too many (?) differentially expressed genes - edgeR and DESeq
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updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 130
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updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 10
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edgeR - filtering criteria
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HTqPCR problems
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12.5 years ago Diane Guevremont ▴ 10
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read.HTSeqCounts with count matrix
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12.5 years ago Alpesh Querer ▴ 220
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2
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GeneticsPed Pedigree object creation error: recursive indexing failed at level 2
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Vector for Targest in Tquantile Normalization for different groups
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12.5 years ago Gordon Smyth 53k
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about the package edgeR
12.5 years ago Georgia Petridou ▴ 10
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Question about quality of biological replicates when using edgeR
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12.5 years ago sheng zhao ▴ 90
0
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Way to extract population specific genotype from 1000 genome
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Doubt on time course design
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updated 12.5 years ago by ▴ 350 • written 12.5 years ago by ★ 13k
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cyber-T error
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12.5 years ago Matthew McCormack ▴ 180
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Limma Multi-level Experiments
12.5 years ago Michael Breen ▴ 380
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5
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AWS cluster not finding installed R packages
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ★ 13k
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use Combat to adjust for hidden variables without knowing batch effect
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12.5 years ago W. Evan Johnson ▴ 870
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3
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TranscriptDb object to RangedData for ChIPpeakAnno
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12.5 years ago Alan Smith ▴ 150
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12
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RNAseq machine learning classifier
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Bsgenome gap mask conundrum
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12.5 years ago Ugo Borello ▴ 340
0
votes
2
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HT-Seq count and GTF
updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 310
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2
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limma for homemade microarray - question on NAs and multiple probes for one gene
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updated 12.5 years ago by 53k • written 12.5 years ago by ★ 3.0k
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Rgraphviz multiline edge label
graph Rgraphviz graph Rgraphviz
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 13k
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job advertisement
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12.5 years ago Zhenyu Xu ▴ 10
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GRange - append metadata from a dataframe
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ▴ 170
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getting a list of genomic sequences from a list of gene names
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ▴ 750
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12.5 years ago Rao,Xiayu ▴ 550
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Contingency tests in R, Error with large numbers
12.5 years ago Gibbons, John G ▴ 10
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5
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filterBam
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updated 12.5 years ago by ▴ 500 • written 12.5 years ago by ▴ 500
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Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
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12.5 years ago Martin Rijlaarsdam ▴ 190
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Normalize background on marray Agilent object
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updated 12.5 years ago by 53k • written 12.5 years ago by ▴ 50
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input format for Mfuzz clustering
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12.5 years ago Fix Ace ▴ 100
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5
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use Combat to adjust for hidden variables without knowing batch effect
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12.5 years ago shirley zhang ★ 1.0k
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DESeq. Error message on estimateDispersions blind
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updated 12.5 years ago by ★ 3.8k • written 12.5 years ago by ▴ 20
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votes
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HTqPCR problem with creation of qPCRset
12.5 years ago Brian Caffrey ▴ 10
0
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4
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DESeq2 design formula error?
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updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 140
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About Quality Control using affyPLM package
12.5 years ago chittabrata mal ▴ 50
0
votes
0
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Converting PDict to DNAStringSet?
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12.5 years ago Ryan C. Thompson ★ 7.9k
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0
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3 empty plots when I use qvalue
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12.5 years ago Emma Timmins-Schiffman ▴ 10
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3
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Error: cannot allocate vector of size
gcrma simpleaffy gcrma simpleaffy
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 50
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0
replies
618
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cummeRbund
12.5 years ago Belmont, John W ▴ 30
0
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0
replies
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GEOquery: incomplete feature data from GPL soft file
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1
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Using gcrma with \"Affymetrix GeneChip miRNA v1.0\" data
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updated 12.5 years ago by 21k • written 12.5 years ago by ★ 13k
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votes
2
replies
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Import a text file
updated 12.5 years ago by ▴ 50 • written 12.5 years ago by ▴ 30
0
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4
replies
1.9k
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sum of columns
12.5 years ago chris Jhon ▴ 260
0
votes
1
reply
1.5k
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Matrix, grid and margin
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 260
0
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2
replies
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Problem installing \'survival\' package/ Fix request + other options?
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updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
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replies
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Correcting for batch effect between two batches of interleaved timepoints
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0
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Pathview: all NA's in the mapped gene data
pathview pathview
12.5 years ago Luo Weijun ★ 1.6k
0
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1
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mock comparison p-value histogram in DEXSeq
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updated 12.5 years ago by ★ 1.9k • written 12.5 years ago by ★ 13k
46,711 results • Page 533 of 935
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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Answer: Where do the filename come from in the LOLA datasets?
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