0
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2
replies
1.1k
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using a gtf file to map reads
GO GenomicFeatures DEXSeq GO GenomicFeatures DEXSeq
updated 12.6 years ago by ★ 1.9k • written 12.6 years ago by ★ 6.8k
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1
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1.1k
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rtracklayer
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 30
0
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8
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7.8k
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PCA-3D Plot
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
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0
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info on pathview
graph PROcess pathview graph PROcess pathview
12.6 years ago Luo Weijun ★ 1.6k
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771
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sample probe profile or sample gene profile
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12.6 years ago Guest User ★ 13k
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Gene expression clustering using several dependent samples
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12.6 years ago Moritz Kebschull ▴ 100
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BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
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4
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1.8k
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problems running DEXseq
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updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 10
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1
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950
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pulling out specific lines from a bam file
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updated 12.6 years ago by 25k • written 12.6 years ago by ★ 13k
0
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0
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765
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targets frame
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12.6 years ago Guest User ★ 13k
0
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2
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1.2k
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Limma design for single channel arrays with technical repeats
updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 10
0
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1
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RNA-seq: interaction effect with DESeq
DESeq DESeq
12.6 years ago galeb abu-ali ▴ 20
0
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3
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1.2k
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read.ilmn() and variation between chips
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updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 550
0
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0
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723
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problem with 'FDb.InfiniumMethylation.hg19'
12.6 years ago VSM ▴ 120
0
votes
4
replies
1.6k
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test for differential expresssion
updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 550
3
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5
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3.5k
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edgeR multiple contrasts Vs. One test
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updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 380
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2
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1.8k
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lumiR returns ExpressionSet object instead of LumiBatch
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updated 12.6 years ago by ▴ 440 • written 12.6 years ago by ★ 13k
0
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Pathview published in Bioinformatics
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12.6 years ago Luo Weijun ★ 1.6k
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0
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How to filter genes not expressed in all arrays using limma (single channel agilent microarray data)
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12.6 years ago Guest User ★ 13k
0
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2
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1.9k
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limma: tissue specific genes using voom
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updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 30
0
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3
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2.3k
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Regarding extraction of 3' and 5'UTRs and exonic region of a gene.
Cancer Cancer
updated 12.6 years ago by 16k • written 12.6 years ago by ▴ 60
0
votes
4
replies
6.2k
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edgeR - ANOVA-like test for differential gene expression
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12.6 years ago Benedikt Drosse ▴ 30
0
votes
1
reply
1.1k
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PREDA command does not work
PREDA PREDA
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Unable to \'standardise\' logtransformed dataset of contrasts using Mfuzz package
Clustering limma Clustering limma
updated 12.6 years ago by ▴ 20 • written 12.6 years ago by ★ 13k
0
votes
0
replies
1.2k
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xzfile() cannot open the connection, lzma encoder error 5.
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12.6 years ago Jose Guillen ▴ 10
0
votes
0
replies
620
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a question about chip normalization
12.6 years ago wang peter ★ 2.0k
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votes
0
replies
1.1k
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comBat or PCA to adjust for hidden variables in qPCR data
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12.6 years ago shirley zhang ★ 1.0k
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votes
0
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Gviz import bed file for AnnotationTrack
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12.6 years ago Christopher DeBoever ▴ 20
0
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1
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edgeR outlier question for version 3.0.8
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updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 340
0
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Gviz error with collapseTranscripts=TRUE
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updated 12.6 years ago by ★ 1.6k • written 12.6 years ago by ▴ 890
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SeqGSEA estiGeneNBstat()
updated 12.6 years ago by ▴ 40 • written 12.6 years ago by ★ 13k
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\"mogene20sttranscriptcluster.db\" not available for installation
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
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7
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htseq and dexseq
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updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 810
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running roast with 6 samples in 2 groups
updated 12.6 years ago by ▴ 120 • written 12.6 years ago by ▴ 110
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Job opening: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital & Harvard Medical School
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12.6 years ago Wittner, Ben ▴ 290
0
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4
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GSEA for R
updated 12.6 years ago by ▴ 50 • written 12.6 years ago by ▴ 240
1
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0
replies
987
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Study design in DEXSeq
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12.6 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
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illumina microarray analysis questions (limma and heatmap)
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12.6 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.5k
views
How to format SWAN minfi data for bumphunter?
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12.6 years ago Guest User ★ 13k
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5
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2.2k
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ERCC spike-in probes in
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updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
0
votes
5
replies
1.9k
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installing the bioconductor package in R 3.0
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ▴ 30
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votes
4
replies
2.7k
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'namespace:Biostrings' error when installing VariantAnnotation
VariantAnnotation VariantAnnotation VariantAnnotation VariantAnnotation
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 20
2
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4
replies
8.2k
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merging GRange objects
Annotation BSgenome BSgenome Annotation BSgenome BSgenome
updated 12.6 years ago by 16k • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.1k
views
R sqllite referencing columns with :1 heading
cummeRbund cummeRbund
updated 12.6 years ago by 16k • written 12.6 years ago by ★ 13k
0
votes
5
replies
2.0k
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TXNAME mapping
GO BSgenome BSgenome GO BSgenome BSgenome
updated 12.6 years ago by ▴ 90 • written 12.6 years ago by ★ 13k
0
votes
2
replies
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edgeR ANOVA testing
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12.6 years ago Michael Breen ▴ 380
0
votes
1
reply
1.2k
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DEXSeq: Problems trying to reproduce the example of the vignette
updated 12.6 years ago by ▴ 190 • written 12.6 years ago by ▴ 10
0
votes
4
replies
1.5k
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Error to install a package for Affymetrix data‏
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 30
0
votes
3
replies
2.1k
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rsbml package installation error
graph rsbml graph rsbml
updated 12.6 years ago by ★ 11k • written 12.6 years ago by ▴ 50
0
votes
2
replies
1.4k
views
error in makeVectorsAffyBatch of frmaTools package
cdf frmaTools cdf frmaTools
updated 12.6 years ago by ▴ 830 • written 12.6 years ago by ▴ 100
46,735 results • Page 536 of 935
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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