0
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6
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2.0k
views
Combining two datasets - help to use GeneMeta.
rae230a affy GeneMeta rae230a affy GeneMeta
updated 19.6 years ago by ▴ 230 • written 19.6 years ago by ▴ 480
0
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0
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RNA deg correction?
19.6 years ago Tarun Nayar ▴ 190
0
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0
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441
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Research Associate Positions in Statistical Bioinformatics
19.6 years ago Jae K. Lee ▴ 10
0
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944
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AnnBuilder problem.
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updated 19.6 years ago by ▴ 870 • written 19.6 years ago by ▴ 310
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decideTests with nestedF
probe limma probe limma
updated 19.6 years ago by ▴ 360 • written 19.6 years ago by 53k
0
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838
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bioconductor.org down on Tuesday June 20th 2:00pm-2:10pm Pacific Time
GO GO
19.6 years ago Hervé Pagès 16k
0
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1.2k
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hopach and heatmap
Clustering hopach Clustering hopach
19.6 years ago Ivan Baxter ▴ 60
0
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II Atlantic Microarray Symposium, August 24-25, Moncton NB, Canada
19.6 years ago Miroslava Cuperlovic-Culf ▴ 50
0
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933
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combined Affybatch and mas5
hgu133a cdf affy matchprobes hgu133a cdf affy matchprobes
19.6 years ago Lewin Eisele ▴ 10
0
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0
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668
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a problem with package limma (read.maimages)
limma limma
19.6 years ago Gordon Smyth 53k
0
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3
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1.0k
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error creating new exprSet
affy affy
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 270
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0
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1.1k
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Farms library
gcrma PROcess farms gcrma PROcess farms
19.6 years ago Phguardiol@aol.com ▴ 720
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0
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778
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limma : design matrix and topTable M values
limma limma
19.6 years ago Sue Jones ▴ 40
0
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0
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1.0k
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a problem with package limma (read.maimages)
19.6 years ago Svetlana Bulashevska ▴ 20
0
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0
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log2 ratio as limma input
limma limma
19.6 years ago yuhong ning ▴ 20
0
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8
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1.3k
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decideTests with nestedF
updated 19.6 years ago by 21k • written 19.6 years ago by ▴ 360
0
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0
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Question about the appropriate uniververse for GOHyperG or hyperGtable
GOstats GOstats
19.6 years ago Seth Falcon ★ 7.4k
0
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0
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875
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Welch approximation: Degrees of freedom impact on pvalues
19.6 years ago Benjamin Otto ▴ 830
0
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1
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807
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rbind of MALists
updated 19.6 years ago by 53k • written 19.6 years ago by ▴ 100
0
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0
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973
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limma: duplicateCorrelation
Normalization Normalization
19.6 years ago Gordon Smyth 53k
0
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2
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1.5k
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median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 19.6 years ago by ★ 1.2k • written 19.6 years ago by ▴ 270
0
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0
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566
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simpleaffy package: Exporting a PairComp object
19.6 years ago Suzanne Szak ▴ 20
0
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2
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875
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multi PMT scan combination
updated 19.6 years ago by ▴ 100 • written 19.6 years ago by ▴ 50
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2
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1.7k
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Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 19.6 years ago by ▴ 50 • written 19.6 years ago by ▴ 20
0
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0
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1.2k
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mouse4302
Annotation mouse4302 probe affy Annotation mouse4302 probe affy
19.6 years ago Nianhua Li ▴ 870
0
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0
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619
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paired samples and duplicateCorrelation iin limma
19.6 years ago Pedro López Romero ▴ 360
0
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3
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1.5k
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plotAffyRNAdeg x-axis length of RNA digestion plot
affy affy
updated 19.6 years ago by 68k • written 19.6 years ago by ▴ 40
0
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2
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1.0k
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Question about the appropriate uniververse for GOHyperG or hyperGtable
GO mouse4302 probe GO mouse4302 probe
updated 19.6 years ago by 68k • written 19.6 years ago by ▴ 300
0
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0
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776
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Reading flag data from Agilent files
19.6 years ago Florian Chain ▴ 20
0
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2
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1.1k
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[Fwd: Re: RBGL1.8 on 64bit Linux?]
updated 19.6 years ago by ▴ 510 • written 19.6 years ago by ▴ 220
0
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5
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2.4k
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R command history on unix version
updated 19.6 years ago by 68k • written 19.6 years ago by ▴ 890
0
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1
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844
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biomaRt error and no devel package for windows?
updated 19.6 years ago by 68k • written 19.6 years ago by ★ 3.4k
0
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2
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896
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rbind of MALists
probe limma probe limma
updated 19.6 years ago by ▴ 100 • written 19.6 years ago by 53k
0
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4
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1.3k
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environment
updated 19.6 years ago by ▴ 870 • written 19.6 years ago by ▴ 10
0
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1
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581
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understanding of makeContrats() in Limma
updated 19.6 years ago by ★ 1.0k • written 19.6 years ago by ▴ 430
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1
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1.7k
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2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques
Visualization Clustering Visualization Clustering
updated 19.6 years ago by ▴ 130 • written 19.6 years ago by ▴ 570
0
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0
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885
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spotsegmentation
CGH spotSegmentation CGH spotSegmentation
19.6 years ago Abdel Benajjou ▴ 10
0
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3
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1.5k
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RBGL1.8 on 64bit Linux?
updated 19.6 years ago by ▴ 510 • written 19.6 years ago by ▴ 220
0
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0
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839
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limma: duplicateCorrelation
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19.6 years ago Christelle Dantec ▴ 20
0
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3
replies
1.4k
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Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 19.6 years ago by ▴ 140 • written 19.6 years ago by ▴ 310
0
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0
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784
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possible boston bioconductor training, 13-15 july 2006
19.6 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.4k
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
19.6 years ago Pedro López Romero ▴ 360
0
votes
0
replies
438
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guidance for making appropriate design matrix - for limmma use
19.6 years ago Sharon Anbu ▴ 480
0
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0
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1.2k
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scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
19.6 years ago Steven McKinney ▴ 310
0
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5
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1.7k
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Rgraphviz edge weight question
Rgraphviz Rgraphviz
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 890
0
votes
8
replies
2.1k
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Ruuid had non-zero exit status
Ruuid Ruuid
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 50
0
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0
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1.3k
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Subsetting limma TestResults
Annotation affy limma Annotation affy limma
19.6 years ago Gordon Smyth 53k
0
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0
replies
1.0k
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One channel microarray antibody analysis
19.6 years ago Jordi Altirriba Gutiérrez ▴ 350
0
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2
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1.7k
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Rmpi loading error --- updates
19.6 years ago Ye, Bin ▴ 150
0
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0
replies
391
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multiple comparisons
19.6 years ago Tarca, Adi ▴ 570
46,721 results • Page 821 of 935
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Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
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This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
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A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
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