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0
votes
0
replies
475
views
CFP: Distributed, High-Performance and Grid Computing in Computational Biology
19.7 years ago
Hershel Safer
▴ 60
0
votes
0
replies
971
views
Memory issues with limma and ImaGen file import
limma
limma
19.7 years ago
Gordon Smyth
53k
0
votes
1
reply
951
views
error running the example of the widget function in the widgetTools library
widgetTools
widgetTools
updated 19.7 years ago by
Seth Falcon
★ 7.4k • written 19.7 years ago by
mattia
▴ 80
0
votes
0
replies
992
views
Memory issues with limma and ImaGen file import
limma
limma
19.7 years ago
Christian Spieth
▴ 10
0
votes
3
replies
1.1k
views
invariant set normalisation
updated 19.7 years ago by
Al Ivens
▴ 270 • written 19.7 years ago by
Sally-Ann Walford
▴ 10
0
votes
8
replies
4.0k
views
Problem installing hexbin?
hexbin
hexbin
updated 19.7 years ago by
Seth Falcon
★ 7.4k • written 19.7 years ago by
Sander Oom
▴ 30
0
votes
0
replies
1.2k
views
"One Way ANOVA" with limma
limma
limma
19.7 years ago
Max Kauer
▴ 40
0
votes
0
replies
1.2k
views
What's new in the graph package
graph
graph
19.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
283
views
golubEset
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
Silveira, Lori
▴ 10
0
votes
0
replies
908
views
Limma: correct calculation of B statistics (log odds)
Microarray
limma
Microarray
limma
19.7 years ago
Gordon Smyth
53k
0
votes
0
replies
1.6k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews
aCGH
SNP
Microarray
Annotation
GO
Clustering
Cancer
Yeast
cdf
probe
RMAGEML
19.7 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.2k
views
Gene-GO
GO
GO
updated 19.7 years ago by
Steffen Durinck
▴ 420 • written 19.7 years ago by
narinder.singh
▴ 40
0
votes
2
replies
943
views
Limma User's Guide Example of design matrices
updated 19.7 years ago by
kfbargad@ehu.es
▴ 270 • written 19.7 years ago by
Mike White
▴ 30
0
votes
0
replies
343
views
pamr package: pamr.adaptthresh()
19.7 years ago
Tim Smith
★ 1.1k
0
votes
3
replies
2.5k
views
Limma: correct calculation of B statistics (log odds)
limma
limmaGUI
limma
limmaGUI
updated 19.7 years ago by
Wittner, Ben
▴ 290 • written 19.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
0
replies
807
views
[Fwd: Re: Problem installing hexbin?]
hexbin
hexbin
19.7 years ago
David Henderson
▴ 100
0
votes
0
replies
845
views
MAQC at FDA
Microarray
Microarray
19.7 years ago
Wu, Xiwei
▴ 350
0
votes
1
reply
1.1k
views
2x2 factorial loop without common reference (pool)
Microarray
limma
Microarray
limma
updated 19.7 years ago by
Jenny Drnevich
★ 2.2k • written 19.7 years ago by
Gordon Smyth
53k
0
votes
0
replies
466
views
Plotting error after quality control
19.7 years ago
marco scandroglio
▴ 10
0
votes
0
replies
1.2k
views
limma, marray and Agilent 44K
Normalization
Biobase
vsn
limma
marray
Normalization
Biobase
vsn
limma
marray
19.7 years ago
Nataliya Yeremenko
▴ 100
0
votes
0
replies
1.1k
views
Limma, marray and Agilent 44K
Normalization
Biobase
vsn
limma
marray
convert
Normalization
Biobase
vsn
limma
marray
19.7 years ago
Nataliya Yeremenko
▴ 10
0
votes
0
replies
520
views
blocking using limma
19.7 years ago
Pedro López Romero
▴ 360
0
votes
1
reply
905
views
Limma; Background and Single Channel Analysis
limma
PROcess
limma
PROcess
updated 19.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 19.7 years ago by
Simone de Jong
▴ 10
0
votes
1
reply
277
views
data with known expressed genes
updated 19.7 years ago by
Sean Davis
21k • written 19.7 years ago by
Tony Zheng
▴ 10
0
votes
2
replies
1.7k
views
How use the function "normalizeWithinArrays" with loess in limma
Normalization
Normalization
19.7 years ago
sysra
▴ 20
0
votes
3
replies
1.5k
views
biomaRt and ensembl tables
biomaRt
biomaRt
updated 19.7 years ago by
Wolfgang Huber
★ 13k • written 19.7 years ago by
Tabare Mourot
▴ 100
0
votes
1
reply
1.5k
views
R installation error----please help
affyio
affyio
updated 19.7 years ago by
Hervé Pagès
16k • written 19.7 years ago by
Zhang, Jacob Zhongfa
▴ 60
0
votes
1
reply
482
views
custom cdf files with just.gcrma
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
D C
▴ 20
0
votes
5
replies
1.7k
views
Duplicated probesets for the same gene
Annotation
probe
Annotation
probe
updated 19.7 years ago by
Ye, Bin
▴ 150 • written 19.7 years ago by
Saroj Mohapatra
▴ 450
0
votes
3
replies
1.4k
views
2x2 factorial loop without common reference (pool)
limma
limma
updated 19.7 years ago by
Naomi Altman
★ 6.0k • written 19.7 years ago by
francois fauteux
▴ 20
0
votes
0
replies
785
views
A limma question
limma
limma
19.7 years ago
Gordon Smyth
53k
0
votes
1
reply
905
views
Question about topTable output formatting (Limma) in Excel
19.7 years ago
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
1
reply
624
views
sample size estimation for microarray data classification or model performance evaluation
updated 19.7 years ago by
Weiwei Shi
★ 1.2k • written 19.7 years ago by
Malick.PAYE@eu.biomerieux.com
▴ 110
0
votes
0
replies
694
views
A limma question.
19.7 years ago
Johan Lindberg
▴ 70
1
vote
3
replies
4.7k
views
Limma: correct calculation of B statistics (log odds)
Microarray
Genetics
limma
limmaGUI
Microarray
Genetics
limma
limmaGUI
updated 19.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 19.7 years ago by
Gordon Smyth
53k
0
votes
4
replies
1.0k
views
Searching for data in data.frames
limma
limma
updated 19.7 years ago by
Stephen Henderson
★ 1.0k • written 19.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
2
replies
1.9k
views
Removing probes before or after normalization
Annotation
Normalization
PROcess
Annotation
Normalization
PROcess
updated 19.7 years ago by
Jenny Drnevich
★ 2.2k • written 19.7 years ago by
Bornman, Daniel M
▴ 110
0
votes
1
reply
1.1k
views
Fusarium CDF
cdf
makecdfenv
cdf
makecdfenv
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
Heather Erika Hallen
▴ 30
0
votes
2
replies
712
views
normalizing with different RNAdeg slopes
19.7 years ago
Tarun Nayar
▴ 190
0
votes
4
replies
1.4k
views
U133A probe sequences...?
probe
affy
probe
affy
updated 19.7 years ago by
Zhijin Jean Wu
▴ 200 • written 19.7 years ago by
Dario Greco
▴ 310
0
votes
2
replies
2.1k
views
Wilcoxon rank sum test on Golub dataset
updated 19.7 years ago by
Björn Usadel
▴ 250 • written 19.7 years ago by
Andrej Kastrin
▴ 90
0
votes
7
replies
812
views
differentially expressed genes with limma
updated 19.7 years ago by
Naomi Altman
★ 6.0k • written 19.7 years ago by
Lisa Luo
▴ 40
0
votes
1
reply
1.1k
views
RBGL package
RBGL
RBGL
updated 19.7 years ago by
Seth Falcon
★ 7.4k • written 19.7 years ago by
Jing Su
▴ 10
0
votes
3
replies
1.9k
views
error in mas5calls() for soybean chip
Survival
hu6800
cdf
probe
Biobase
genefilter
reposTools
affy
affydata
limma
gcrma
made4
updated 19.7 years ago by
Ken Simpson
▴ 70 • written 19.7 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
658
views
webbioc
updated 19.7 years ago by
kirk hammet
▴ 110 • written 19.8 years ago by
Matthias Wittwer
▴ 10
0
votes
2
replies
2.2k
views
Limma vs anova (GeneSpring)
19.7 years ago
Wettenhall James
▴ 40
0
votes
1
reply
1.2k
views
affycoretools limma2annaffy fold change output question
affycoretools
affycoretools
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
Kimpel, Mark W
▴ 890
2
votes
5
replies
2.2k
views
Error with GEOquery
GEOquery
GEOquery
updated 19.7 years ago by
Peter
▴ 170 • written 19.8 years ago by
Sharon Anbu
▴ 480
0
votes
4
replies
1.6k
views
hgu133plus2 GO issues
Annotation
GO
hgu133plus2
probe
Annotation
GO
hgu133plus2
probe
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
Jacob Michaelson
▴ 320
0
votes
0
replies
458
views
GEOquery problems
19.7 years ago
Alberto Goldoni
▴ 360
46,712 results • Page
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
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▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
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★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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