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following contributors:
7 years, 5 months ago
The city by the bay
Is Limma's removeBatchEffect() and log2() commutative?
7 years, 5 months ago
The city by the bay
Allele Specific Expression in DESeq2 or EdgeR
7 years, 5 months ago
WEHI, Melbourne, Australia
RNA-Seq, generate batch-free count matrix
7 years, 5 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
7 years, 5 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
7 years, 5 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 5 months ago
United States
Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis
7 years, 5 months ago
United States
DESeq2: Is it possible to convert read counts to expression values via TPM and return these values?
7 years, 5 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
7 years, 5 months ago
United States
Using 'tximport' library for downstream DGE after quantifying with Kallisto
7 years, 5 months ago
EMBL Heidelberg
R: error while reading .h5 files from R using rdhf5 package
7 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Batch correction in DESeq2
7 years, 6 months ago
United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
7 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
7 years, 8 months ago
United States
Combining RangedData objects is broken (IRanges 2.8.1 with R version 3.3.3 RC)
7 years, 8 months ago
USA
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 9 months ago
The city by the bay
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
7 years, 10 months ago
The city by the bay
limma Time Course Experiment with many time points
7 years, 11 months ago
Zentrum für Molekularbiologie, Universi…
DEXSeq Usage and Expression Confusion
8 years, 1 month ago
United States
A: How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
8 years, 4 months ago
8 years, 5 months ago
United States
A: WGCNA - Signed vs signed hybrid networks
8 years, 7 months ago
Argentina/Cordoba/Universidad Católica …
RDAVIDWebService Error 301: Moved Permanently
8 years, 7 months ago
United States
heatmap.2() get matrix after hierarchical clustering
8 years, 7 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
8 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
8 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
Using multiple tools for differential gene expression analysis as validation
8 years, 8 months ago
Seattle, WA, United States
annotatePeak() in ChIPseeker - how long does it take to run?
8 years, 11 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 1 month ago
Icahn School of Medicine at Mount Sinai…
A: Correct assumptions of using limma moderated t-test
9 years, 1 month ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 1 month ago
The city by the bay
limma Time Course Experiment with many time points
9 years, 1 month ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 1 month ago
Seattle, WA, United States
annotatePeak() in ChIPseeker - how long does it take to run?
9 years, 4 months ago
The city by the bay
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
9 years, 5 months ago
United States
Limma - discrepancy in number of significant genes
9 years, 5 months ago
United States
Limma - discrepancy in number of significant genes
9 years, 5 months ago
United States
What is the best way to get help on Bioconductor packages?
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