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nromerov • 0
2 years, 3 months ago
Colombia
enrichPlot error when plotting topGO results
mat149 ▴ 80
2 years, 3 months ago
United States
Help with orgdb for non-model species via makeOrgPackageFromNCBI
Ankit ▴ 20
2 years, 3 months ago
Italy
Blood cell composition adjustment in methylation EPIC array: ChAMP
Weiqian ▴ 10
2 years, 3 months ago
United States
Questions about the false positives indicated by DESeq2 and QQ plot
nromerov • 0
2 years, 3 months ago
Colombia
Biostrings error at retrieving protein sequences
Daniel E. Weeks ▴ 30
2 years, 3 months ago
Pittsburgh, Pennsylvania, United States…
Gviz: UcscTrack and "GC Percent" information
Lluís Revilla Sancho ▴ 760
2 years, 3 months ago
European Union
bug in block.plsda from mixOmics?
Gregory • 0
2 years, 3 months ago
United States
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Jonathan ▴ 10
2 years, 3 months ago
United States
Phenotype effect - building a contrast matrix - grouping vs interaction
Theo ▴ 10
2 years, 3 months ago
Germany
DeSeq2 design fails (full model matrix is less than full rank)
Jitendra ▴ 10
2 years, 3 months ago
United Kingdom
DMRcate design
Dario Strbenac ★ 1.6k
2 years, 3 months ago
Australia
DataFrame Construction With Non-standard Column
Koki ▴ 10
2 years, 3 months ago
Japan
Speeding up of DelayedArray::write_block()
Dario Strbenac ★ 1.6k
2 years, 3 months ago
Australia
Matching Variants Between Two VCF Objects
Szabolcs • 0
2 years, 3 months ago
Germany
Representation of self-loops and the calculation of degrees
shepherl 4.3k
2 years, 3 months ago
United States
List of Deprecated Packages for Bioc3.18
gingergeiger22 • 0
2 years, 4 months ago
United States
TPM from STAR mapped counts
Vitor • 0
2 years, 4 months ago
United States
Import Salmon data with tximport and pool technical replicates
ZheFrench ▴ 60
2 years, 4 months ago
France
Format roxgen comment (alternative to formatR)
richardallenfriedmanbrooklyn ▴ 30
2 years, 4 months ago
United States
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
shepherl 4.3k
2 years, 4 months ago
United States
Bioconductor 3.18 Release Schedule
Gordon Smyth 53k
2 years, 4 months ago
WEHI, Melbourne, Australia
Read data file containing both counts and annotation into edgeR
Maria Doyle ▴ 110
2 years, 4 months ago
Ireland
News: BioCAsia2023 Abstract Submission & Registration Now Open!
IUH • 0
2 years, 4 months ago
United States
PCA percent variance DESeq2
Wolfgang Huber ★ 13k
2 years, 4 months ago
EMBL European Molecular Biology Laborat…
EMBL-EBI Data resources: Functional Genomics and Single Cell Biology Team Leader
hayleyw • 0
2 years, 4 months ago
Canada
How long does it usually take to complete dream() from start to finish?
Lucy ▴ 60
2 years, 4 months ago
United Kingdom
Applicability of AUCell to bulk RNA-seq
snijesh ▴ 200
2 years, 5 months ago
India
How to identify the batch informations from the sample ID?
nhaus ▴ 70
2 years, 5 months ago
Switzerland
Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
Gerhard Thallinger ▴ 180
2 years, 5 months ago
Austria
Rsubread: subjunc() loads index repeatedly
Sara • 0
2 years, 5 months ago
Belgium
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
Cen • 0
2 years, 5 months ago
United States
loading scores using plotMDS in limma
lamia11me • 0
2 years, 5 months ago
United States
DESeq2 interaction design
Eva ▴ 10
2 years, 5 months ago
Spain
lfcShrink() and batch effects in DESeq2
martin.grigorov ▴ 10
2 years, 5 months ago
Bulgaria
ASpli checks fail on Linux due to missing dependency to statmod
richardallenfriedmanbrooklyn ▴ 30
2 years, 5 months ago
United States
How to annotate mir4.1 arrays?
Jonathan ▴ 10
2 years, 5 months ago
United States
Adding a group of samples reduces DEGs in other groups
Jonathan ▴ 10
2 years, 5 months ago
United States
Limma multi-group, nested analysis with aggregation
bpshtiwan ▴ 10
2 years, 5 months ago
Iraq
Error in Create switchAnalyzeRlist
Chris ▴ 20
2 years, 5 months ago
United States
Help with error DiffBind
Sam ▴ 10
2 years, 5 months ago
Jerusalem
DiffBind does not use DESeq2 MLE estimation of fold change
rae.alshammari ▴ 20
2 years, 5 months ago
United States
Warning messages in detecting P-values
chiwut.wong • 0
2 years, 5 months ago
United States
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
bhandary.8590 ▴ 20
2 years, 5 months ago
United States
Question regarding lfcShrink types in DiffBind
Luca • 0
2 years, 5 months ago
Italy
RNA seq differential expression analysis for large sample size
Jonathan ▴ 10
2 years, 5 months ago
United States
Grouping DEGs yields varying results
mohammedtoufiq91 ▴ 10
2 years, 5 months ago
United States
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
Matthias Munz ▴ 20
2 years, 5 months ago
Germany
Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
Chris ▴ 20
2 years, 6 months ago
United States
Reading data into chromVAR
Cen • 0
2 years, 6 months ago
United States
using fgsea to compare two datasets
8,992 results • Page 6 of 180
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