Scholar
Created An Answer That Has Been Accepted
Awarded 5102 times (see all awards). Earned by the
following contributors:
3 years, 10 months ago
United States
Answer: DESeq2: Subset Results from 2-Factor Design
3 years, 10 months ago
United States
Answer: First principal component variance stabilised RNA-seq data correlates with total
3 years, 10 months ago
WEHI, Melbourne, Australia
Answer: scuttle:: librarySizeFactors returning non-finite values
3 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Unable to install "limma" package on RStudio
3 years, 10 months ago
United States
Answer: Unable to install "limma" package on RStudio
3 years, 10 months ago
WEHI, Melbourne, Australia
Answer: What to do if covariates in design matrix of limma are confounded
3 years, 10 months ago
EMBL Heidelberg
Answer: Unable to install "limma" package on RStudio
3 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Where to find old limma packages not part of a Bioc release?
3 years, 10 months ago
Worcester
Answer: another problem when converting bed to granges using togranges
3 years, 10 months ago
United States
Answer: trackViewer assigning track colors
3 years, 10 months ago
United States
Answer: How to deal with Expression set assembly problem?
3 years, 10 months ago
Canada
Answer: Problem converting a bed file to granges using togranges chippeakanno
3 years, 10 months ago
United States
Answer: How to solve the "tilted tail" after DESeq2 normalization.
3 years, 10 months ago
Cambridge, UK
Answer: How to get 3/4 peak overlap in DiffBind?
3 years, 11 months ago
United States
Answer: Limma/voom analysis of time-series data (with only 1 condition)
3 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Differential gene expression and (adjusted) p-values
3 years, 11 months ago
United States
Answer: Where can I find EnsDb.Hsapiens.v105?
3 years, 11 months ago
Seattle, WA, United States
Answer: How to find the BSgenome object that provided the seqinfo of a GRanges object ?
3 years, 11 months ago
United States
Answer: Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
3 years, 11 months ago
United States
Answer: pathview returns incorrect mappings for yeast
3 years, 11 months ago
United States
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
3 years, 11 months ago
WEHI, Melbourne, Australia
Answer: catchKallisto results are not counts
3 years, 11 months ago
Switzerland
Answer: Gviz DataTrack data transformation on the fly
3 years, 11 months ago
Cambridge, UK
Answer: Not able to replicated Diffbind example dataset.
3 years, 11 months ago
United States
Answer: Joint disperstion estimation for DEXSeq and DESeq2
3 years, 11 months ago
United States
Answer: traviz 1.0.0 installation fails: ERROR: lazy loading failed
3 years, 11 months ago
EMBL Heidelberg
Answer: Again, query error when trying to retrieve attributes from Phytozome via BiomaRt
3 years, 11 months ago
United States
Answer: Start to End RNA-Seq with R Bioconductor
3 years, 12 months ago
United States
Answer: not receive notification after successful push to bioconductor with version bump
4 years ago
United States
Answer: P-values change 100-fold with only a single count changed
4 years ago
Seattle, WA, United States
Answer: Splitting a TxDB or GRanges by Chromosome
4 years ago
United Kingdom
Answer: mixOmics 3D scatterplot for individuals not displaying
4 years ago
WEHI, Melbourne, Australia
Answer: Filtering low coverage RRBS counts results in few reads. Any alternatives?
4 years ago
EMBL Heidelberg
Answer: Install package without updating dependent package
4 years ago
Italy
Answer: Problem converting transcript to genomic coordinates with Annotation Hub
4 years ago
United States
Answer: DESEQ2 Results log2fold and pvalue changes after removing genes
4 years ago
Spain
Answer: How to keep cells square in heatplot function of enrichplot
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