Scholar
Created An Answer That Has Been Accepted
Awarded 5092 times (see all awards). Earned by the
following contributors:
3 years, 5 months ago
United States
Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Handling NA values in limma's voom design matrix
3 years, 5 months ago
WEHI, Melbourne, Australia
Answer: Variance explained (coefficient of determination) in edgeR
3 years, 5 months ago
Germany
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
3 years, 5 months ago
Cambridge, UK
Answer: DiffBind always reverts to default normalization
3 years, 5 months ago
Seattle, WA, United States
Answer: Request : Add Chinese Spring Wheat genome to BSgenome
3 years, 5 months ago
United States
Answer: Using SingleR for Single cell annotation with BulkRNASeq
3 years, 5 months ago
United States
Answer: Get corresponding gene id for probe id from Affymetrix array
3 years, 5 months ago
United States
Answer: edgeR: How to display/plot individual miRNAs found to be differentialy expressed
3 years, 5 months ago
United States
Answer: IsoformSwitchAnalyzeR: object 'analysisAllIsoformsWithoutORF' not found
3 years, 6 months ago
United States
Answer: Extracting Score/Coverage From GRange Object
3 years, 6 months ago
Netherlands
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Large difference in PCA plot based on LCPM (log counts per million) and VST (va
3 years, 6 months ago
India
Answer: Using SingleR for Single cell annotation with BulkRNASeq
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: How to make design matrices or compare contrast in limma
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Limma vs. lm for methylation data
3 years, 6 months ago
United States
Answer: Questions regarding failing tximeta import for swish
3 years, 6 months ago
Miami, US
Answer: GDCprepare of RNAseq counts produces error
3 years, 6 months ago
Barcelona/Universitat Pompeu Fabra
Answer: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: how to change axis labeling in limma density plot
3 years, 7 months ago
United States
Answer: DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
3 years, 7 months ago
WEHI, Melbourne, Australia
Answer: Make samples symbols bigger in PCA / MDS analysis with plotMDS function
3 years, 7 months ago
WEHI, Melbourne, Australia
Answer: The number of controls versus treatment in differential expression analysis
3 years, 7 months ago
United States
Answer: Finding significant up-regulated and down-regulated genes given a log2FoldChange
3 years, 7 months ago
United States
Answer: The number of controls versus treatment in differential expression analysis
3 years, 7 months ago
United States
Answer: Strange error while running DESeq() function.
3 years, 7 months ago
United States
Answer: motifStack Plotting the correct data positions on x axis
3 years, 7 months ago
WEHI, Melbourne, Australia
Answer: Complex contrasts in limma
3 years, 7 months ago
United States
Answer: ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl'
3 years, 7 months ago
United States
Answer: DESeq2: Subset Results from 2-Factor Design
3 years, 7 months ago
United States
Answer: First principal component variance stabilised RNA-seq data correlates with total
3 years, 8 months ago
WEHI, Melbourne, Australia
Answer: scuttle:: librarySizeFactors returning non-finite values
3 years, 8 months ago
WEHI, Melbourne, Australia
Answer: Unable to install "limma" package on RStudio
3 years, 8 months ago
United States
Answer: Unable to install "limma" package on RStudio
3 years, 8 months ago
WEHI, Melbourne, Australia
Answer: What to do if covariates in design matrix of limma are confounded
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