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Created An Answer That Has Been Accepted
Awarded 5092 times (see all awards). Earned by the
following contributors:
3 years, 11 months ago
Seattle, WA, United States
Answer: S4Vectors, strange metadata behavior
3 years, 11 months ago
United States
Answer: Coding Style for BioC Package submissions: camelCaps or snake_case?
3 years, 11 months ago
Seattle, WA, United States
Answer: `promoters()` fails on `GPos` objects
3 years, 11 months ago
United States
Answer: Which rlog should I use for DESeq2 analysis
3 years, 11 months ago
United States
Answer: rnaseqGene: Different output when generating step by step airway dataset
3 years, 11 months ago
United States
Answer: Extracting fitted expression in limma
3 years, 11 months ago
WEHI, Melbourne, Australia
Answer: RMA on different disease labels
3 years, 11 months ago
United States
Answer: DESeq2 with multiple variable give me different results
3 years, 11 months ago
Wageningen University, Wageningen, the …
Answer: gseGO input list
3 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Advice to use block factor and duplicatecorrelation in RNA-seq experiment
3 years, 11 months ago
San Diego
Answer: Batch effect from to sequencing data at differents depths
3 years, 11 months ago
United States
Answer: Batch effect from to sequencing data at differents depths
3 years, 11 months ago
United States
Answer: Specify hg19 in using biomaRt getBM function
3 years, 12 months ago
WEHI, Melbourne, Australia
Answer: DESeq2/edgeR/limma help with most appropriate design matrix
3 years, 12 months ago
United States
Answer: [recount3] Merge gene counts tables from multiple projects (SRP)
3 years, 12 months ago
United States
Answer: DESeq2 normalization when using with derfinder
3 years, 12 months ago
United States
Answer: mitochondrial RNA percentage in bulk RNAseq data
3 years, 12 months ago
Wageningen University, Wageningen, the …
Answer: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
4 years ago
Toulouse, France
Answer: scater::plotHeatmap with swap_rownames gives error
4 years ago
EMBL Heidelberg
Answer: Error connecting to external databases through celldex
4 years ago
United States
Answer: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
4 years ago
United States
Answer: biomart query in R is not matching ensembl website - missing results
4 years ago
WEHI, Melbourne, Australia
Answer: edgeR contrasts confusion when multiple groups are involved
4 years ago
EMBL Heidelberg
Answer: Problem opening hdf5 files previously created with HDF5Array functions
4 years ago
United States
Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
4 years ago
Wageningen University, Wageningen, the …
Answer: enrichDGN result can't be visualised by barplot
4 years ago
The city by the bay
Answer: Does MNN removes same average batch vector from all cells or each cell has it's
4 years ago
San Diego
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
4 years ago
United States
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
4 years, 1 month ago
EMBL Heidelberg
Answer: Format roxgen comment (alternative to formatR)
4 years, 1 month ago
United States
Answer: Understanding output of Negative Binomial in DESeq2
4 years, 1 month ago
United States
Answer: Warning messages on Apple M1 BigSur
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
4 years, 1 month ago
United Kingdom
Answer: Correct way to make multiple comparisons on DESeq2?
4 years, 1 month ago
United States
Answer: Converting between UCSC id and gene symbol with bioconductor annotation resource
4 years, 1 month ago
United States
Answer: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
4 years, 1 month ago
United States
Answer: How to subset GRangesList by seqnames
4 years, 1 month ago
San Diego
Answer: Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expec
4 years, 1 month ago
Cambridge, UK
Answer: Diffbind: differences between design vs no design (same comparison)?
4 years, 1 month ago
United States
Answer: How to obtain a GC content file to use in HMMcopy?
4 years, 1 month ago
Cambridge, UK
Answer: DiffBind fold parameter vs. IfcThreshold in DESeq2
4 years, 1 month ago
Cambridge, UK
Answer: DiffBind (Error in if (DBA$config$parallelPackage))
4 years, 2 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: ylim and xlim in Enhanced Volcano
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: Query regarding the use of eBayes + topTable and treat + topTreat
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