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Created An Answer That Has Been Accepted
Awarded 5102 times (see all awards). Earned by the
following contributors:
4 years, 1 month ago
United States
Answer: How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
4 years, 1 month ago
Seattle, WA, United States
Answer: Please allow integers in `numeric` format in `seqlengths`
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Multi-level design RRBS analysis with voomLmFit
4 years, 1 month ago
Austria
Answer: XVector installation fails because zlib.h is not found
4 years, 1 month ago
The city by the bay
Answer: Block weights in scran::pairwiseTTests
4 years, 1 month ago
Seattle, WA, United States
Answer: XVector installation fails because zlib.h is not found
4 years, 1 month ago
Seattle, WA, United States
Answer: S4Vectors, strange metadata behavior
4 years, 1 month ago
United States
Answer: Coding Style for BioC Package submissions: camelCaps or snake_case?
4 years, 1 month ago
Seattle, WA, United States
Answer: `promoters()` fails on `GPos` objects
4 years, 1 month ago
United States
Answer: Which rlog should I use for DESeq2 analysis
4 years, 1 month ago
United States
Answer: rnaseqGene: Different output when generating step by step airway dataset
4 years, 1 month ago
United States
Answer: Extracting fitted expression in limma
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: RMA on different disease labels
4 years, 1 month ago
United States
Answer: DESeq2 with multiple variable give me different results
4 years, 1 month ago
Wageningen University, Wageningen, the …
Answer: gseGO input list
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: Advice to use block factor and duplicatecorrelation in RNA-seq experiment
4 years, 2 months ago
San Diego
Answer: Batch effect from to sequencing data at differents depths
4 years, 2 months ago
United States
Answer: Batch effect from to sequencing data at differents depths
4 years, 2 months ago
United States
Answer: Specify hg19 in using biomaRt getBM function
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: DESeq2/edgeR/limma help with most appropriate design matrix
4 years, 2 months ago
United States
Answer: [recount3] Merge gene counts tables from multiple projects (SRP)
4 years, 2 months ago
United States
Answer: DESeq2 normalization when using with derfinder
4 years, 2 months ago
United States
Answer: mitochondrial RNA percentage in bulk RNAseq data
4 years, 2 months ago
Wageningen University, Wageningen, the …
Answer: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
4 years, 2 months ago
Toulouse, France
Answer: scater::plotHeatmap with swap_rownames gives error
4 years, 2 months ago
EMBL Heidelberg
Answer: Error connecting to external databases through celldex
4 years, 2 months ago
United States
Answer: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
4 years, 2 months ago
United States
Answer: biomart query in R is not matching ensembl website - missing results
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: edgeR contrasts confusion when multiple groups are involved
4 years, 2 months ago
EMBL Heidelberg
Answer: Problem opening hdf5 files previously created with HDF5Array functions
4 years, 2 months ago
United States
Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
4 years, 2 months ago
Wageningen University, Wageningen, the …
Answer: enrichDGN result can't be visualised by barplot
4 years, 3 months ago
EMBL Heidelberg
Answer: GenomicRanges::union fails on R devel
4 years, 3 months ago
The city by the bay
Answer: Does MNN removes same average batch vector from all cells or each cell has it's
4 years, 3 months ago
San Diego
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
4 years, 3 months ago
United States
Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
4 years, 3 months ago
EMBL Heidelberg
Answer: Format roxgen comment (alternative to formatR)
4 years, 3 months ago
United States
Answer: Understanding output of Negative Binomial in DESeq2
4 years, 3 months ago
United States
Answer: Warning messages on Apple M1 BigSur
4 years, 3 months ago
WEHI, Melbourne, Australia
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
4 years, 3 months ago
United Kingdom
Answer: Correct way to make multiple comparisons on DESeq2?
4 years, 3 months ago
United States
Answer: Converting between UCSC id and gene symbol with bioconductor annotation resource
4 years, 3 months ago
United States
Answer: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
4 years, 3 months ago
United States
Answer: How to subset GRangesList by seqnames
4 years, 3 months ago
San Diego
Answer: Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expec
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