Scholar
Created An Answer That Has Been Accepted
Awarded 5104 times (see all awards). Earned by the
following contributors:
4 years, 11 months ago
United States
Answer: Using group instead of interaction term on a custom edited matrix
4 years, 11 months ago
United States
Answer: Produce quantile normalized expression values for use with BatchQC
4 years, 11 months ago
Austria
C: Help understanding the contrast function in DESeq2
4 years, 11 months ago
Cambridge, UK
Answer: DiffBind analysis for ATAC-Seq error Error processing one or more read files
4 years, 11 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: DEseq2 results
4 years, 11 months ago
United States
Answer: makeTxDbFromUCSC("mm10", "refGene") gives "not supported" error
4 years, 11 months ago
United States
Answer: How to find the source code of the package STRINGdb ?
4 years, 11 months ago
WEHI, Melbourne, Australia
Answer: How to download KEGG pathways for list of enriched genes
4 years, 11 months ago
EMBL Heidelberg
Answer: Extract flanking sequence for a list of genes with biomaRt
4 years, 11 months ago
United States
Answer: Gene Selection GTex for DESeq2 Analysis
4 years, 11 months ago
United States
Answer: Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
4 years, 11 months ago
United States
Answer: Unable to read in the IDAT files using read.metharray.exp()
4 years, 11 months ago
University of Padova
Answer: EDASeq normalization: genes with 0 counts
4 years, 11 months ago
United States
Answer: Importing data into the DESeq2 pipeline using tximport
4 years, 11 months ago
Cambridge, UK
Answer: DiffBind analysis on ChIP-Seq qata and design matrix
4 years, 11 months ago
The city by the bay
Answer: DE Analysis on Scran-Normalized Counts
4 years, 11 months ago
WEHI, Melbourne, Australia
Answer: Can I remove failed samples using DGEList then filterByExpr?
4 years, 11 months ago
Barcelona/Universitat Pompeu Fabra
Answer: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
4 years, 11 months ago
Italy
Answer: Mapping Ensemble IDs with version numbers using ensembl annotation packages
4 years, 12 months ago
The city by the bay
Answer: Merging only those samples sequenced over multiple batches - scRNA-seq
4 years, 12 months ago
United States
Answer: DEseq2: working with unbalanced number of sample in tumor study?
4 years, 12 months ago
Switzerland
A: Using pre-indexed genome files for alignment of RNA-Seq reads via Rhisat2
4 years, 12 months ago
United States
Answer: apeglm -- influence of reference level on logFC and svalues
5 years ago
United States
Answer: Convert UniProt Entry Names into Gene Symbols
5 years ago
Cambridge, UK
Answer: dba.count() of DiffBind 3.0 does not have bSubControl parameter
5 years ago
Wageningen University, Wageningen, the …
Answer: From a ENST to ENSG
5 years ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: PCAtools - change colour of points
5 years ago
WEHI, Melbourne, Australia
Answer: Using limma for the analysis of qPCR data
5 years ago
EMBL Heidelberg
Answer: How to get both hgnc_symbol and all cdna_coding_start values associated?
5 years ago
United States
Answer: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
5 years ago
United States
Answer: Biocthis GHA recently fails for macOS
5 years ago
United States
Answer: Issue with TxDb.Mmusculus.UCSC.mm10.knownGene "TXNAME" no longer UCSC style but
5 years ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: How to better design a Volcano plot
5 years ago
United States
Answer: Incomplete GWAS Catalog Data from makeCurrentGwascat()
5 years ago
WEHI, Melbourne, Australia
Answer: Limma Paired Analysis - Force intercept to 0
5 years ago
WEHI, Melbourne, Australia
Answer: Duplicated ENTREZID gene annotations org.Hs.eg.db
5 years ago
United States
Answer: Duplicated ENTREZID gene annotations org.Hs.eg.db
5 years ago
San Diego
Answer: Design formula for pairwise comparison of experimental setup with multiple facto
5 years ago
Cambridge, UK
Answer: Using DiffBind blacklists and greylists with results mapped to BDGP6
5 years, 1 month ago
United States
Answer: Something strange in the ranking of genes by DESeq2
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: Extract canonical coding sequence with getBM
5 years, 1 month ago
United States
A: Unexpected error with topGO, cannot build topGOdata object
5 years, 1 month ago
WEHI, Melbourne, Australia
Answer: read.idat function misleading error when reading compressed files
5 years, 1 month ago
United States
Answer: DESeq usage of transcript TPM after tximport
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