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Asked A Question With At Least 3 Up-Votes

Awarded 161 times (see all awards). Earned by the following contributors:
shepherl 4.1k
1 year, 1 month ago
United States
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
Alessia ▴ 40
1 year, 3 months ago
Italy
can't install DESeq2 ("unable to access index for repository")
L ▴ 50
1 year, 10 months ago
Germany
Why in Bioconductor community people rarely upvote questions?
luca.s ▴ 50
1 year, 10 months ago
Italy
on which data type limma::removeBatchEffect can be applyed?
matthias-doering ▴ 40
2 years, 5 months ago
Belgium
RFC: Inconsistent software license for scran & automated license checks
vm ▴ 30
2 years, 6 months ago
Brazil
HTSeq Counts no longer available
Dina ▴ 50
2 years, 7 months ago
United States
biomaRt error unable to fix: need help troubleshooting
array chip ▴ 420
3 years ago
United States
Installing Bioconductor
rafaelsolersanblas ▴ 50
3 years ago
Alicante
Which rlog should I use for DESeq2 analysis
Michael Love 43k
3 years ago
United States
ensembldb support for Ensembl's transcript_name column
mizzle ▴ 60
3 years, 6 months ago
United States
Cannot install packages by BiocManager::install()
Vincent J. Carey, Jr. 6.7k
3 years, 6 months ago
United States
Avoid upgrading BiocManager to 1.30.13; fix proposed
english.server ▴ 20
3 years, 8 months ago
Iran
Limma DEG analysis experiment with partial paired design + batch effect
2323982403 ▴ 60
3 years, 8 months ago
Ann Arbor
WGCNA with paired samples
pegah.taklifi ▴ 30
3 years, 8 months ago
Iran
error while installing " BSgenome.Hsapiens.UCSC.hg19"
Andy91 ▴ 60
3 years, 11 months ago
Netherlands
Understanding contrasts limma
YunYun ▴ 70
3 years, 11 months ago
Seattle
it paused in line **byte-compile and prepare package for lazy loading** when install package EnsDb.Hsapiens.v75
Batool ▴ 370
3 years, 11 months ago
`ggbio` package can't be loaded
Batool ▴ 370
3 years, 11 months ago
`TxDb.Hsapiens.UCSC.hg19.knownGene` and `EnsDb.Hsapiens.v75` can't be installed anymore
Jenny Drnevich ★ 2.0k
3 years, 11 months ago
United States
Problem with tximport(reader = read_tsv) and workaround
anton.kratz ▴ 60
3 years, 12 months ago
Japan, Tokyo, The Systems Biology Insti…
[sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
landenshanie ▴ 40
4 years, 1 month ago
Australia
Biomart error when updating to R 4.0.2
Gordon Smyth 52k
5 years, 8 months ago
WEHI, Melbourne, Australia
Compare and filter two BAM files, one record at a time
daniel.magnus.bader ▴ 50
5 years, 9 months ago
Create protein sequences including variants from a VCF file
S.Webb6 ▴ 40
5 years, 10 months ago
Setting gene expression thresholds for trajectory analysis using Monocle
Gordon Smyth 52k
5 years, 10 months ago
WEHI, Melbourne, Australia
non-integer counts for edgeR
Assa Yeroslaviz ★ 1.5k
5 years, 10 months ago
Germany
deseq2 correcting for batch effects
tangming2005 ▴ 200
5 years, 11 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
svlachavas ▴ 840
6 years ago
Germany/Heidelberg/German Cancer Resear…
Appropriate use of the function treat of the limma package
mat.lesche ▴ 110
6 years, 1 month ago
Germany
DESeq2: removing levels from a factor or not having them in the analysis at all
Aditya ▴ 160
6 years, 2 months ago
Germany
Best way to convert uniprot accessions to entrez gene identifiers in R
Benjamin Ostendorf ▴ 90
6 years, 3 months ago
United States
Log2FoldChange shrinkage method in DESeq2
casey.rimland ▴ 170
6 years, 3 months ago
University of Cambridge, National Insti…
DESeq2 on NanoString Data
rory.kirchner ▴ 60
6 years, 3 months ago
ZINB-WaVE + DESeq2 misses low-expressed, single-condition genes that look like they should be markers
aush ▴ 40
6 years, 3 months ago
United States
resize (shrink/expand) GenomicRanges
maltethodberg ▴ 180
6 years, 4 months ago
Denmark
Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
BharathAnanth ▴ 80
6 years, 4 months ago
cameraPR vs geneSetTest and ROAST/CAMERA in general
AB ▴ 110
6 years, 4 months ago
United States
Batch correction in DESeq2
C T ▴ 140
6 years, 5 months ago
United States
Dispersion fit and p-value distributions
kaur.alasoo ▴ 30
6 years, 5 months ago
University of Tartu, Tartu, Estonia
GenomicFeatures makeTxDbFromBiomart fails with "unkown species" error
raya.fai ▴ 60
6 years, 6 months ago
Israel
Dealing with genes that have Padj=NA
Vivek.b ▴ 100
6 years, 6 months ago
Germany
RDAVIDWebService Error 301: Moved Permanently
casey.rimland ▴ 170
6 years, 6 months ago
University of Cambridge, National Insti…
DESeq2 on NanoString Data
joseph.elsherbini ▴ 60
6 years, 6 months ago
Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
Wolfgang Huber ★ 13k
6 years, 6 months ago
EMBL European Molecular Biology Laborat…
exprs function - clash with dplyr
Matthew McCall ▴ 830
6 years, 7 months ago
United States
DESeq fitted values using coefficients vs mu
Chris Stubben ▴ 40
6 years, 7 months ago
Salt Lake City, Utah
Scan error using biomart with version option
rached ▴ 60
6 years, 8 months ago
Pre-processing RNA-seq data (normalization and transformation) for GSVA
anand_mt ▴ 90
6 years, 9 months ago
too many genes with low read-counts as differential expressed in DESeq2
Gregulator ▴ 30
6 years, 10 months ago
Australia
getBM error: The query to the BioMart webservice returned an invalid result
161 results • Page 1 of 4
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