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Asked A Question With At Least 3 Up-Votes

Awarded 161 times (see all awards). Earned by the following contributors:
kevin.kingsland ▴ 70
6 years, 10 months ago
DESeq2 with interaction using SVA
heyao ▴ 30
6 years, 12 months ago
scran: Are the log counts expression comparable among different genes within a sample/cell ?
p.janitza ▴ 50
7 years, 1 month ago
Problem installing BiocGenerics
ginggs ▴ 40
7 years, 2 months ago
BiocGenerics built with R 3.4.2 changes behaviour
lpsantamaria ▴ 40
7 years, 2 months ago
biomaRt: error using useDataset or useMart
biakemi ▴ 40
7 years, 5 months ago
readCufflinks problem with extdata
Aaron Lun ★ 28k
7 years, 5 months ago
The city by the bay
Duplicated author affiliations in BiocStyle-based HTML document
Gordon Smyth 52k
7 years, 5 months ago
WEHI, Melbourne, Australia
non-integer counts for edgeR
Michael Love 43k
7 years, 5 months ago
United States
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
svlachavas ▴ 840
7 years, 5 months ago
Germany/Heidelberg/German Cancer Resear…
Appropriate use of the function treat of the limma package
svlachavas ▴ 840
7 years, 5 months ago
Germany/Heidelberg/German Cancer Resear…
Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotation options
Ryan C. Thompson ★ 7.9k
7 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Can I meaningfully interpret a PCA or MDS plot of data with surrogate variable effects subtracted?
Michael Love 43k
7 years, 5 months ago
United States
recount counts in the example experiment
Keith Hughitt ▴ 180
7 years, 5 months ago
United States
WGCNA: overlapping colors in plotDendroAndColors?
ben ▴ 30
7 years, 5 months ago
DESeqDataSetFromTximport with kallisto abundances.
Biologist ▴ 120
7 years, 5 months ago
How to check the read length for all the TCGA data samples in GDC?
sina.nassiri ▴ 130
7 years, 6 months ago
Switzerland/Lausanne
GSVA indifferent to 'abs.ranking'
j.bergenstrahle ▴ 90
7 years, 6 months ago
Rsubread counting peaks ATACseq
j.bergenstrahle ▴ 90
7 years, 6 months ago
fdrtool - correction of p-values - course found on huber.embl.de
Michael Love 43k
7 years, 6 months ago
United States
Updated DESeq2 performance on highly replicated yeast RNA-seq data
tangming2005 ▴ 200
7 years, 6 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
Johannes Rainer ★ 2.1k
7 years, 6 months ago
Italy
Easy way to sort GRangesList by seqname/start position?
I.Castanho ▴ 50
7 years, 6 months ago
DESeq2 likelihood ratio test (LRT) design - 2 genotypes, 4 time points
JWCarlson ▴ 80
7 years, 6 months ago
DESeqDataSetFromTximport: Error in checkSlotAssignment
dhibar ▴ 60
7 years, 7 months ago
Possible to incorporate the sign or direction of an effect in the IHW covariate?
dmr210 ▴ 30
7 years, 7 months ago
GC/length bias correction in gene expression quantification - Is CQN necessary if using Salmon --GCBias option?
enricoferrero ▴ 660
7 years, 7 months ago
Switzerland
Can't upgrade to Bioconductor 3.3?
Johannes Rainer ★ 2.1k
7 years, 7 months ago
Italy
Problem with biomart's listMarts function
komal.rathi ▴ 120
7 years, 8 months ago
United States
Extract sequence from DNAStringSet object
deut13 ▴ 80
7 years, 8 months ago
Germany
Error in GRanges: could not find symbol "recursive" in environment of the generic function
Ezgi Karaesmen ▴ 30
7 years, 8 months ago
Gviz: How to control `grid` parameter and how to add horizontal lines with different colors to DataTrack?
Brian Smith ▴ 120
7 years, 9 months ago
United States
Chromosome position to nucleotide - Biostrings?
Ramiro Magno ▴ 100
7 years, 9 months ago
CBMR, Faro, Portugal
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
NS ▴ 60
7 years, 9 months ago
United States
Mapping genome regions to gene symbols
fizer ▴ 40
7 years, 9 months ago
US
plotDEXSeq error in plot.window(xlim = c(0, 1), ylim = c(0, max(matr))) : need finite 'ylim' values
Greg Finak ▴ 240
7 years, 10 months ago
United States
An appeal to flow cytometry tools users
kjo ▴ 70
7 years, 10 months ago
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
John Brothers II ▴ 90
7 years, 11 months ago
Cambridge, MA
Differences between limma voom E values and edgeR cpm values?
Lescai, Francesco ▴ 380
8 years, 2 months ago
Denmark
getBM returns shorter vectors than values
smithng1215 ▴ 30
8 years, 4 months ago
Trouble with Tximport
yi.huang ▴ 30
8 years, 4 months ago
How to remove more than two batches in my data-sets
kmuench ▴ 40
8 years, 6 months ago
United States
What does this error mean? - issue implementing SVA
chris86 ▴ 420
8 years, 7 months ago
UCL, United Kingdom
Limma camera function never gives any differentially expressed gene sets
Gordon Smyth 52k
8 years, 7 months ago
WEHI, Melbourne, Australia
BH vs BY in p.adjust + FDR interpretation
andrew.j.skelton73 ▴ 370
8 years, 7 months ago
United Kingdom
DEXSeq Usage and Expression Confusion
andrew.j.skelton73 ▴ 370
8 years, 7 months ago
United Kingdom
Plot ggplot2 and ggbio Images Together
cardenasca ▴ 40
8 years, 7 months ago
Plotting Differentially Methylated Regions
Michael Love 43k
8 years, 7 months ago
United States
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Jurat Shahidin ▴ 80
8 years, 7 months ago
Chicago, IL, USA
Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?
Agaz Hussain Wani ▴ 260
8 years, 7 months ago
India
Annotation package for Codelink 55K Human Array
161 results • Page 2 of 4
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