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following contributors:
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Featurecount -- normalized Path error
6 years, 10 months ago
United States
A: DESeq2 w. pathway/network info as a prior knowledge
6 years, 10 months ago
The city by the bay
A: What is the "linear model" part used for in Limma?
6 years, 10 months ago
The city by the bay
A: edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
6 years, 10 months ago
WEHI, Melbourne, Australia
A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
6 years, 10 months ago
United States
A: Detect genes that moved up or down over time in the same way in multiple strains
6 years, 11 months ago
United States
How to add my own Entrez Gene IDs rather than using the ones from a default package?
6 years, 11 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
6 years, 11 months ago
United States
Common differentially expressed genes between two cell lines
6 years, 11 months ago
United States
How does DESeq2 handle zero counts in one condition?
6 years, 11 months ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years, 11 months ago
United States
[DESeq2] time series strain-specific differences over time
6 years, 11 months ago
United States
Deseq2: RNA-seq and Negative binomial distribution
6 years, 11 months ago
EMBL Heidelberg
'biomaRt expected a character string of length 1' error with getBM and reseq mrna filer
6 years, 11 months ago
EMBL Heidelberg
getBM error: The query to the BioMart webservice returned an invalid result
6 years, 11 months ago
Seattle, WA, United States
Rsamtools v 1.99.6 installation error
6 years, 11 months ago
United States
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
6 years, 11 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
6 years, 11 months ago
United States
How does DESeq2 handle zero counts in one condition?
6 years, 11 months ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years, 11 months ago
United States
[DESeq2] time series strain-specific differences over time
6 years, 11 months ago
United States
Common differentially expressed genes between two cell lines
6 years, 11 months ago
United States
DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
6 years, 11 months ago
United States
[DESEQ2] How to access the normalized data of a DESeqDataSet
6 years, 11 months ago
EMBL Heidelberg
Error: Bioconductor version '3.8' requires R version '3.5'
6 years, 11 months ago
EMBL Heidelberg
getBM error: The query to the BioMart webservice returned an invalid result
6 years, 11 months ago
Wageningen University, Wageningen, the …
run LIMMA package encounts clariomdhumancdf error
6 years, 11 months ago
Wageningen University, Wageningen, the …
run affy package encounts clariomdhumancdf error
6 years, 11 months ago
WEHI, Melbourne, Australia
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
6 years, 11 months ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
6 years, 11 months ago
WEHI, Melbourne, Australia
Volcanoplot with limma - RAW P-values or Adj.P-Values
6 years, 11 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
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