4
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5
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Method to find pathways different between 2 groups
fgsea GSVA CAMERA
16 days ago • updated 6 days ago Chris ▴ 10
0
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2
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959
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 6 days ago by • 0 • written 18 months ago by • 0
2
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1
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How to design DEXSeq formula for multiple variables
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updated 6 days ago by ★ 1.9k • written 8 days ago by • 0
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Assymetric MA plot with no overall trend
DESeq2 DifferentialExpression
updated 6 days ago by 42k • written 7 days ago by • 0
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125
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Erroe when using makeOrgPackageFromNCBI()
AnnotationForge
6 days ago Patadù ▴ 10
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0
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Difference in Contrast in DiffBind
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6 days ago zzrammal • 0
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2
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210
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Citation for edgeR user guide
edgeR
written 28 days ago by ▴ 30
57 results • Page 2 of 2
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Thank you so much!
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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